Rw0G018730

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00847
OG0000382
Physical Location & Seq
Reverse (-)
45954 .. 48664
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018730.1

Sequence Viewer

Length: 759 bp
ATGGTTACTATGTCAATACTACTGTTAGATCAGACCCAGAACACAAGAAAGAGCTTCCTCACAGCTCTGCCAGGAGCAGAAGAAAGGCTCCAAATTTTCAACGCGGACCTAAGCAACCCAGAAAGTTTCAATGCAGCCATCCAAGGATGCGTCGGAGTGTTCCATGTTGCTACTCCGGTTGACTTTGAAGACAAGGAACCTGAACCAGCAGTGACGAAACGATCAATCGATGGAGCCCTTGGTATCCTCAAGGCGTGCTTATATGCAAAAACAGTGAAACGAGTTGTGTACACTTCTAGTGCATCTGCTGTTGCATTTAGCAACAAGGATGTGGAAGACATGGATGAGAGTTTTTGGAGTGACACAGATTACATTAAAGCTTTAAAGCCTTATGGAGGCTCATACATGATTTCGAAGACATTGACTGAAAGGGCAGTTCTTGAATTTTCGGAGAAAAATGGATTGGAGGTTGTGACAGTAATTCCTTCTTTTGTTGTTGGCCCCTTCATTTGTCCCAAGTTCCCTGGCTCTGTTCGGACCGCATTGGCTCTGGTTTTAGGAAACAGGGATGAATATCCTGTTCTTATCAATATGTCAGTGGTACATGTGGATGATGTCGCCAGAGCGCACATTTTCCTTTTCGAACATCATGATGCAAAAGGGAGATACAATTGCTCATCAAATGTCATAACAATTGAAGAAATGGCCGAGTTCATTTTTGCCAAATTCCCCGAATTGCAAATACCCTCAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

252

Amino Acids

27.81

Weight (kDa)

5.04

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDP_Man_Dehyd PF16363 20 - 242 1.9e-06 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 26 - 180 4.2e-09 Male sterility protein
Epimerase PF01370 27 - 225 6e-18 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 32 - 212 1.3e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 104, 540
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 3 cut(s) 93, 443, 725
AfaI GTAC 2 cut(s) 290, 603
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 5 cut(s) 100, 130, 188, 443, 698
AjnI CCWGG 2 cut(s) 70, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 3 cut(s) 54, 65, 380
AluI AGCT 3 cut(s) 54, 65, 380
AoxI GGCC 2 cut(s) 499, 705
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 93, 443, 725
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 3 cut(s) 106, 500, 537
AsuII TTCGAA 2 cut(s) 413, 642
AvaII GGWCC 2 cut(s) 106, 537
BanII GRGCYC 1 cut(s) 238
BbsI GAAGAC 3 cut(s) 195, 342, 422
BbvCI CCTCAGC 1 cut(s) 748
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 146, 224
BciT130I CCWGG 2 cut(s) 72, 525
BciVI GTATCC 1 cut(s) 254
BfaI CTAG 1 cut(s) 297
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 72, 525
Bme18I GGWCC 2 cut(s) 106, 537
BmgT120I GGNCC 3 cut(s) 106, 500, 537
BmiI GGNNCC 4 cut(s) 89, 198, 235, 502
BmrFI CCNGG 2 cut(s) 72, 525
BmsI GCATC 3 cut(s) 137, 311, 643
BpiI GAAGAC 3 cut(s) 195, 342, 422
Bpu10I CCTNAGC 2 cut(s) 110, 748
Bpu14I TTCGAA 2 cut(s) 413, 642
BpuEI CTTGAG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 142, 238, 523
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 2 cut(s) 72, 525
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 142, 238, 523
BseGI GGATG 6 cut(s) 138, 152, 334, 349, 574, 616
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 501, 707
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 2 cut(s) 501, 707
Bsp119I TTCGAA 2 cut(s) 413, 642
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 2 cut(s) 28, 221
BspACI CCGC 2 cut(s) 104, 540
BspANI GGCC 2 cut(s) 501, 707
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 4 cut(s) 89, 198, 235, 502
BspT104I TTCGAA 2 cut(s) 413, 642
BsrGI TGTACA 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 142, 238, 523
BssMI GATC 2 cut(s) 28, 221
BssT1I CCWWGG 2 cut(s) 142, 238
Bst2UI CCWGG 2 cut(s) 72, 525
Bst4CI ACNGT 3 cut(s) 24, 274, 478
BstAUI TGTACA 1 cut(s) 288
BstBI TTCGAA 2 cut(s) 413, 642
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 110, 748
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 6 cut(s) 138, 152, 334, 349, 574, 616
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 2 cut(s) 31, 224
BstMBI GATC 2 cut(s) 28, 221
BstNI CCWGG 2 cut(s) 72, 525
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 2 cut(s) 70, 523
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 3 cut(s) 195, 342, 422
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 501, 707
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 6 cut(s) 138, 152, 334, 349, 574, 616
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 279, 603
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 649
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 3 cut(s) 106, 500, 537
ClaI ATCGAT 1 cut(s) 228
CpoI CGGWCCG 1 cut(s) 537
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 289, 602
CspI CGGWCCG 1 cut(s) 537
CviAII CATG 5 cut(s) 164, 340, 406, 605, 650
CviQI GTAC 2 cut(s) 289, 602
DdeI CTNAG 2 cut(s) 110, 748
DpnI GATC 2 cut(s) 30, 223
DpnII GATC 2 cut(s) 28, 221
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 142, 238
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 106, 537
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 70, 523
EcoT14I CCWWGG 2 cut(s) 142, 238
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 142, 238
FaeI CATG 5 cut(s) 167, 343, 409, 608, 653
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 498
FatI CATG 5 cut(s) 163, 339, 405, 604, 649
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 6 cut(s) 125, 159, 341, 356, 581, 623
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 627
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 501, 707
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 628
Hin1II CATG 5 cut(s) 167, 343, 409, 608, 653
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 378
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 3 cut(s) 181, 289, 291
Hpy188I TCNGA 4 cut(s) 33, 155, 451, 537
Hpy188III TCNNGA 2 cut(s) 440, 650
Hpy8I GTNNAC 3 cut(s) 181, 289, 291
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 495, 514
HpyCH4III ACNGT 3 cut(s) 24, 274, 478
HpyCH4V TGCA 6 cut(s) 134, 266, 302, 314, 656, 739
HpyF3I CTNAG 2 cut(s) 110, 748
Hsp92II CATG 5 cut(s) 167, 343, 409, 608, 653
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 2 cut(s) 28, 221
LmnI GCTCC 3 cut(s) 74, 93, 233
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 3 cut(s) 137, 311, 643
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 4, 211, 359, 472
MalI GATC 2 cut(s) 30, 223
MboI GATC 2 cut(s) 28, 221
MboII GAAGA 5 cut(s) 92, 200, 347, 427, 710
MfeI CAATTG 2 cut(s) 670, 693
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 7 cut(s) 93, 443, 480, 670, 693, 725, 734
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 68, 257, 389, 460, 757
MseI TTAA 2 cut(s) 375, 383
MslI CAYNNNNRTG 2 cut(s) 609, 651
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 72, 525
MunI CAATTG 2 cut(s) 670, 693
MvaI CCWGG 2 cut(s) 72, 525
MvnI CGCG 1 cut(s) 104
NdeII GATC 2 cut(s) 28, 221
NlaIII CATG 5 cut(s) 167, 343, 409, 608, 653
NlaIV GGNNCC 4 cut(s) 89, 198, 235, 502
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 3 cut(s) 211, 359, 472
NspI RCATGY 1 cut(s) 608
NspV TTCGAA 2 cut(s) 413, 642
PagI TCATGA 1 cut(s) 649
PciI ACATGT 1 cut(s) 604
PkrI GCNGC 1 cut(s) 136
PscI ACATGT 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 70, 523
PspGI CCWGG 2 cut(s) 70, 523
PspN4I GGNNCC 4 cut(s) 89, 198, 235, 502
PspPI GGNCC 3 cut(s) 106, 500, 537
RsaI GTAC 2 cut(s) 290, 603
RsaNI GTAC 2 cut(s) 289, 602
RseI CAYNNNNRTG 2 cut(s) 609, 651
Rsr2I CGGWCCG 1 cut(s) 537
RsrII CGGWCCG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 375, 383
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 28, 221
Sau96I GGNCC 3 cut(s) 106, 500, 537
ScrFI CCNGG 2 cut(s) 72, 525
SduI GDGCHC 1 cut(s) 238
SetI ASST 6 cut(s) 56, 67, 111, 202, 382, 471
SfaNI GCATC 3 cut(s) 137, 311, 643
SfuI TTCGAA 2 cut(s) 413, 642
SinI GGWCC 2 cut(s) 106, 537
SmiMI CAYNNNNRTG 2 cut(s) 609, 651
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 7 cut(s) 93, 443, 480, 670, 693, 725, 734
SsiI CCGC 2 cut(s) 104, 540
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 70, 523
StyI CCWWGG 2 cut(s) 142, 238
TaaI ACNGT 3 cut(s) 24, 274, 478
TaqI TCGA 3 cut(s) 228, 413, 642
TasI AATT 7 cut(s) 93, 443, 480, 670, 693, 725, 734
TatI WGTACW 1 cut(s) 288
Tru1I TTAA 2 cut(s) 375, 383
Tru9I TTAA 2 cut(s) 375, 383
TscAI CASTG 3 cut(s) 216, 279, 603
TseFI GTSAC 3 cut(s) 211, 359, 472
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 3 cut(s) 211, 359, 472
TspDTI ATGAA 3 cut(s) 496, 585, 703
TspRI CASTG 3 cut(s) 216, 279, 603
VpaK11BI GGWCC 2 cut(s) 106, 537
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 3 cut(s) 93, 443, 725
XceI RCATGY 1 cut(s) 608
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.