RchiOBHm_Chr1g0350361

Male sterility protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
43537933 .. 43540864
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57623

Sequence Viewer

Length: 981 bp
ATGGAGAGAGATCGGTCGATGGAAGAAGTCAGAGGTACAGTCTGTGTAACTGGTGGAACAGGATATATAGCCTCATGGCTGATTCTGAGGCTGCTTCAGCATGGTTACTCGGTTCGAGCCACCATTAGATCCAGCTACTACCTGACAAGCCTTCCAGGAGCACAAGAGAAACTCCAAATCTTCCATGCAGATCTCAACAACCCCGAGACCTTCAACGACGCCATCCAAGGCTGCACCGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGCAAAGAACCCGAGGAAACCGTAACCAAACGAGCCCTGGAAGGAACACTAGGCATTTTGAAGGCATGCCTAAGTTGCAAGACGGTGAGGCGAGTGGTTTACACATCCAGTTTGGCCACAATATTGTACAACAGCAAGCGTCTTGAAGAAACTGATGAAAACACATGGAGTGAGGCTGATGTATGCAGAAGTAACAAGCTTGTGATCTCTTCTTACTTGGTTTCCAAGACTCTGGTGGAGAGGACAGCCCTGGAATTTGCAGAGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTTGTTGGACCCTTCGTTTGTCCAAATGTTCCTGCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTGACCAAGAGCAATGTAAATATCTTGTTAGCACATATATGGTGCACATAGATGATGTGGCGAGTGCCCATATCTTCCTTCTTGAACATGCTAATGCAAAAGGGAGGTACATTTGTTCGTCGATCCAAACAATGATTCATGAGTTTTATGACTTTCTTTCCGCAAGATACCCAGAACTTCATATATCAATACCAGATCAGTTAATGGAGATTAAAGGTTACAAAGGAACTAATGTATCGTCAATGAAACTGTTGAATACTGGCTTCAAATTTAAATACGGCCTTGGGGAAATGTTTGATGGCGCTATTCAATCTTGCAAAGAGAAGGGTTTTCTATAA

Protein Analysis

326

Amino Acids

36.42

Weight (kDa)

6.01

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 13 - 125 7.1e-09 NmrA-like family
Epimerase PF01370 14 - 248 4.4e-24 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 16 - 190 2.1e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 16 - 265 3.2e-12 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 16 - 195 7.2e-09 Male sterility protein
NAD_binding_10 PF13460 18 - 131 4.8e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 804
AclWI GGATC 3 cut(s) 123, 558, 760
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 527, 911
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 4 cut(s) 37, 401, 620, 752
AfiI CCNNNNNNNGG 1 cut(s) 641
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 8 cut(s) 214, 272, 334, 419, 728, 898, 910, 953
AjnI CCWGG 3 cut(s) 154, 309, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AluBI AGCT 2 cut(s) 135, 472
AluI AGCT 2 cut(s) 135, 472
Alw21I GWGCWC 2 cut(s) 163, 690
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 686
AlwI GGATC 3 cut(s) 123, 558, 760
Ama87I CYCGRG 2 cut(s) 203, 284
AoxI GGCC 2 cut(s) 387, 922
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 2 cut(s) 91, 231
ApoI RAATTY 2 cut(s) 527, 911
ArsI GACNNNNNNTTYG 2 cut(s) 576, 608
AsiGI ACCGGT 1 cut(s) 236
AspLEI GCGC 1 cut(s) 947
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 3 cut(s) 248, 370, 656
AvaI CYCGRG 2 cut(s) 203, 284
AvaII GGWCC 1 cut(s) 584
BaeGI GKGCMC 2 cut(s) 690, 712
BaeI ACNNNNGTAYC 4 cut(s) 742, 775, 861, 894
BalI TGGCCA 1 cut(s) 389
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 163, 690
BbvI GCAGC 2 cut(s) 78, 218
BccI CCATC 3 cut(s) 13, 230, 935
BceAI ACGGC 1 cut(s) 937
BciT130I CCWGG 3 cut(s) 156, 311, 524
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 948
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 92, 232
BlsI GCNGC 2 cut(s) 93, 233
Bme1390I CCNGG 3 cut(s) 156, 311, 524
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 2 cut(s) 203, 284
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 586, 633
BmrFI CCNGG 3 cut(s) 156, 311, 524
BpiI GAAGAC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 6 cut(s) 226, 261, 285, 309, 522, 925
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 55, 381, 907
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 3 cut(s) 156, 311, 524
BseDI CCNNGG 6 cut(s) 226, 261, 285, 309, 522, 925
BseGI GGATG 2 cut(s) 222, 377
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 3 cut(s) 55, 381, 907
BseSI GKGCMC 2 cut(s) 690, 712
BseXI GCAGC 2 cut(s) 78, 218
BsgI GTGCAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 389, 924
BshTI ACCGGT 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 163, 690
BsiHKCI CYCGRG 2 cut(s) 203, 284
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 2 cut(s) 389, 924
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 2 cut(s) 203, 284
Bsp1286I GDGCHC 4 cut(s) 163, 310, 690, 712
Bsp1407I TGTACA 2 cut(s) 399, 618
Bsp143I GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 804
BspANI GGCC 2 cut(s) 389, 924
BspCNI CTCAG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 586, 633
BspPI GGATC 3 cut(s) 123, 558, 760
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 236
BsrGI TGTACA 2 cut(s) 399, 618
BsrI ACTGG 3 cut(s) 55, 381, 907
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 6 cut(s) 226, 261, 285, 309, 522, 925
BssMI GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 3 cut(s) 226, 261, 925
Bst2UI CCWGG 3 cut(s) 156, 311, 524
Bst4CI ACNGT 5 cut(s) 40, 295, 358, 562, 894
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 219
BstAUI TGTACA 2 cut(s) 399, 618
BstC8I GCNNGC 2 cut(s) 340, 410
BstDEI CTNAG 2 cut(s) 86, 344
BstDSI CCRYGG 1 cut(s) 261
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 2 cut(s) 222, 377
BstH2I RGCGCY 1 cut(s) 948
BstHHI GCGC 1 cut(s) 947
BstKTI GATC 7 cut(s) 13, 131, 193, 480, 553, 768, 841
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 97, 348
BstNI CCWGG 3 cut(s) 156, 311, 524
BstNSI RCATGY 2 cut(s) 342, 734
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 3 cut(s) 154, 309, 522
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 2 cut(s) 690, 712
BstV1I GCAGC 2 cut(s) 78, 218
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 3 cut(s) 128, 190, 550
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 3 cut(s) 128, 190, 550
BsuRI GGCC 2 cut(s) 389, 924
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 222, 377
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 340, 410
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 947
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 2 cut(s) 227, 401
Csp6I GTAC 4 cut(s) 36, 400, 619, 751
CspAI ACCGGT 1 cut(s) 236
CviQI GTAC 4 cut(s) 36, 400, 619, 751
DdeI CTNAG 2 cut(s) 86, 344
DpnI GATC 7 cut(s) 12, 130, 192, 479, 552, 767, 840
DpnII GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
DraI TTTAAA 1 cut(s) 916
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 3 cut(s) 226, 261, 925
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 2 cut(s) 203, 284
Eco91I GGTNACC 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 154, 309, 522
EcoT14I CCWWGG 3 cut(s) 226, 261, 925
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 226, 261, 925
Fnu4HI GCNGC 2 cut(s) 92, 232
FokI GGATG 2 cut(s) 209, 364
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 92, 232
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 946
GluI GCNGC 2 cut(s) 92, 232
HaeII RGCGCY 1 cut(s) 948
HaeIII GGCC 2 cut(s) 389, 924
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 227, 401
HhaI GCGC 1 cut(s) 947
Hin1I GRCGYC 1 cut(s) 219
Hin6I GCGC 1 cut(s) 945
HinP1I GCGC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 82, 502, 778
HpaII CCGG 1 cut(s) 237
HphI GGTGA 3 cut(s) 248, 370, 656
Hpy166II GTNNAC 3 cut(s) 373, 619, 688
Hpy188I TCNGA 2 cut(s) 32, 87
Hpy188III TCNNGA 3 cut(s) 416, 725, 782
Hpy8I GTNNAC 3 cut(s) 373, 619, 688
Hpy99I CGWCG 2 cut(s) 221, 766
HpyAV CCTTC 8 cut(s) 161, 220, 266, 308, 328, 598, 731, 961
HpyCH4III ACNGT 5 cut(s) 40, 295, 358, 562, 894
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 8 cut(s) 188, 234, 351, 459, 533, 688, 740, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 348
HpyF3I CTNAG 2 cut(s) 86, 344
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 219
HspAI GCGC 1 cut(s) 945
Kzo9I GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
LmnI GCTCC 2 cut(s) 158, 637
Lsp1109I GCAGC 2 cut(s) 78, 218
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 7 cut(s) 46, 104, 295, 464, 556, 644, 860
MalI GATC 7 cut(s) 12, 130, 192, 479, 552, 767, 840
MboI GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
MboII GAAGA 6 cut(s) 35, 172, 235, 431, 474, 709
MflI RGATCY 3 cut(s) 128, 190, 550
MhlI GDGCHC 4 cut(s) 163, 310, 690, 712
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 2 cut(s) 527, 911
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 9 cut(s) 26, 81, 82, 280, 354, 439, 507, 531, 741
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 3 cut(s) 845, 855, 915
MslI CAYNNNNRTG 4 cut(s) 626, 680, 693, 735
Msp20I TGGCCA 1 cut(s) 389
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 3 cut(s) 156, 311, 524
MvaI CCWGG 3 cut(s) 156, 311, 524
MwoI GCNNNNNNNGC 2 cut(s) 97, 348
NcoI CCATGG 1 cut(s) 261
NdeII GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
NlaIV GGNNCC 2 cut(s) 586, 633
NmuCI GTSAC 2 cut(s) 556, 644
NspI RCATGY 2 cut(s) 342, 734
PaeI GCATGC 1 cut(s) 342
PagI TCATGA 1 cut(s) 781
PfeI GAWTC 2 cut(s) 82, 778
PfoI TCCNGGA 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 2 cut(s) 93, 233
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp6I CCWGG 3 cut(s) 154, 309, 522
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 154, 309, 522
PspN4I GGNNCC 2 cut(s) 586, 633
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 3 cut(s) 128, 190, 550
RsaI GTAC 4 cut(s) 37, 401, 620, 752
RsaNI GTAC 4 cut(s) 36, 400, 619, 751
RseI CAYNNNNRTG 4 cut(s) 626, 680, 693, 735
SaqAI TTAA 3 cut(s) 845, 855, 915
SatI GCNGC 2 cut(s) 92, 232
Sau3AI GATC 7 cut(s) 10, 128, 190, 477, 550, 765, 838
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 3 cut(s) 156, 311, 524
SduI GDGCHC 4 cut(s) 163, 310, 690, 712
SetI ASST 9 cut(s) 37, 137, 144, 212, 252, 270, 474, 752, 862
SfcI CTRYAG 1 cut(s) 573
SgrAI CRCCGGYG 1 cut(s) 236
SinI GGWCC 1 cut(s) 584
SmiI ATTTAAAT 1 cut(s) 916
SmiMI CAYNNNNRTG 4 cut(s) 626, 680, 693, 735
SphI GCATGC 1 cut(s) 342
Sse9I AATT 2 cut(s) 527, 911
SsiI CCGC 1 cut(s) 804
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 154, 309, 522
StyI CCWWGG 3 cut(s) 226, 261, 925
SwaI ATTTAAAT 1 cut(s) 916
TaaI ACNGT 5 cut(s) 40, 295, 358, 562, 894
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 17, 115, 764
TasI AATT 2 cut(s) 527, 911
TatI WGTACW 2 cut(s) 399, 618
TfiI GAWTC 2 cut(s) 82, 778
Tru1I TTAA 3 cut(s) 845, 855, 915
Tru9I TTAA 3 cut(s) 845, 855, 915
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 2 cut(s) 556, 644
TseI GCWGC 2 cut(s) 91, 231
Tsp45I GTSAC 2 cut(s) 556, 644
TspDTI ATGAA 4 cut(s) 444, 770, 812, 902
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 2 cut(s) 527, 911
XceI RCATGY 2 cut(s) 342, 734
XcmI CCANNNNNNNNNTGG 2 cut(s) 307, 505
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.