RchiOBHm_Chr1g0350311

vestitone reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000382
Physical Location & Seq
Forward (+)
43458883 .. 43459779
897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57619

Sequence Viewer

Length: 261 bp
ATGATTCTAGGAAATGCAGATAAGTATACACATCTTCACAAGCTGAGTTTGGTACATGTAGATGATTTGGTTAACGCCCATATCTTTCTTTTTGAAAATTCTAATGCTAAAGGGAGGTACATTTGTTCATCAACTCCAACATCAATAGACGAAATGTACCGATTTCTTTCTATAAAATACCCGAATTTTCAGATGCCAACTGTAGGAGTGATCAAGTCAATAATGCAGCCAAAGCCAAGGTCAACACGCAAGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

86

Amino Acids

9.87

Weight (kDa)

9.72

Isoelectric Point (pI)

20.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 26
AcsI RAATTY 2 cut(s) 97, 184
AfaI GTAC 3 cut(s) 54, 119, 158
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 97, 184
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BbvI GCAGC 1 cut(s) 238
BclI TGATCA 1 cut(s) 210
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmsI GCATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 1 cut(s) 210
BssNAI GTATAC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 44
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 238
BstZ17I GTATAC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 53, 118, 157
CviAII CATG 1 cut(s) 56
CviJI RGCY 3 cut(s) 43, 229, 235
CviKI_1 RGCY 3 cut(s) 43, 229, 235
CviQI GTAC 3 cut(s) 53, 118, 157
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 27, 57, 81, 173
FatI CATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 210
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 2 cut(s) 73, 243
HindII GTYRAC 2 cut(s) 73, 243
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 27, 73, 243
Hpy188I TCNGA 1 cut(s) 192
Hpy8I GTNNAC 3 cut(s) 27, 73, 243
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 17, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 8
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 26
MluCI AATT 2 cut(s) 97, 184
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 1 cut(s) 108
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 59
NspI RCATGY 1 cut(s) 59
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 55
RsaI GTAC 3 cut(s) 54, 119, 158
RsaNI GTAC 3 cut(s) 53, 118, 157
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 210
SetI ASST 3 cut(s) 45, 119, 242
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 201
SgeI CNNG 6 cut(s) 20, 52, 68, 193, 226, 249
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 97, 184
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 202
TasI AATT 2 cut(s) 97, 184
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 2 cut(s) 97, 184
XceI RCATGY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 26
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.