MD07G1121700.v1.1

vestitone reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000382
Physical Location & Seq
Forward (+)
15581326 .. 15583062
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1121700.v1.1.491

Sequence Viewer

Length: 798 bp
ATGATATCTTTTGTATCATTTCTTTTCTGTTGTAGATTCTCTATGTACATCAGCTTCCTCACAAGCCTGCCAAGAGCATCTTCACATCTTCACATCTTCAATGTAGATCTCAACCAGCCTGACAGTTTCAATGCAGCAATTGAAGGATGCATTGGGGTTTTCCATGTTGCTCACCCTATGCCTGACAAAGAACTTGAAGAAGATTCGGTGACGAAAAAATCTGTCCAAGGAGCCCTAGGAATATTGAAAGCATGCCTAAACTCCAAGACTATGAAGAGGGTTGTGTACACTTCTAGTGCAGCAGCTGCGGTTTACAGTGACAATGGCCGTGACTCGGTGGATGAAAGTACATGGAGCGACATTGAATACCATAGGTCTCTCAAATTATTTGGGACTTCATATGTGGCTGCCAAGACCAAGACAGAACAAATAGCGCTAAAATTTGCAGAAGAAAATGAACTGGAACTTGTGACTTTACTCCCTCCATTAGTTGTTGGTGGATTTCTCTGCAAAACTCTCCCTGCCTCAGTGTATTTGTCGCTATCCATGATTCTAGGAAATCAAGATCACTACAAACATCTTATGAGGCAAAATATGGTACATGTAGATGACTTGGTTAGTGCCCATATATTTCTTTTTGAAAACCCTAATGCCAAAGGGAGGTACATTTGTTCATCAAATCAGATAACCATAGATGAAATGTCCCAATTTCTTTCTGCAAAATACCCGGGTTTTCGCATTCCCACAACTGATTTGTTGAAAGGCATTGAAGGTTACAAAAGGCCTTGCCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

266

Amino Acids

29.59

Weight (kDa)

6.5

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 27 - 219 1.2e-12 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 32 - 211 1.7e-09 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 796
AciI CCGC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 5 cut(s) 47, 287, 349, 600, 665
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 334, 660
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 9 cut(s) 100, 130, 143, 197, 247, 365, 641, 760, 770
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 135, 167
AluBI AGCT 2 cut(s) 54, 305
AluI AGCT 2 cut(s) 54, 305
Alw26I GTCTC 1 cut(s) 381
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 727
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 2 cut(s) 325, 782
ApeKI GCWGC 5 cut(s) 134, 299, 302, 305, 407
ApoI RAATTY 1 cut(s) 440
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 1 cut(s) 436
AsuC2I CCSGG 2 cut(s) 728, 729
AsuHPI GGTGA 2 cut(s) 164, 220
AvaI CYCGRG 1 cut(s) 727
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 625
BaeI ACNNNNGTAYC 2 cut(s) 655, 688
BanII GRGCYC 1 cut(s) 235
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbvI GCAGC 5 cut(s) 146, 292, 311, 314, 394
BceAI ACGGC 1 cut(s) 312
BcnI CCSGG 2 cut(s) 728, 729
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 3 cut(s) 236, 294, 554
BfoI RGCGCY 1 cut(s) 437
BglII AGATCT 1 cut(s) 106
BisI GCNGC 5 cut(s) 135, 300, 303, 306, 408
BlnI CCTAGG 1 cut(s) 235
BlsI GCNGC 5 cut(s) 136, 301, 304, 307, 409
Bme1390I CCNGG 2 cut(s) 728, 729
BmeT110I CYCGRG 1 cut(s) 727
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 728, 729
BmsI GCATC 2 cut(s) 86, 137
BpuMI CCSGG 2 cut(s) 728, 729
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 226, 235, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 660
Bse1I ACTGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 226, 235, 727
BseGI GGATG 2 cut(s) 152, 346
BseLI CCNNNNNNNGG 2 cut(s) 334, 660
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 5 cut(s) 146, 292, 311, 314, 394
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 2 cut(s) 327, 784
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 2 cut(s) 406, 688
BslI CCNNNNNNNGG 2 cut(s) 334, 660
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 2 cut(s) 406, 688
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 2 cut(s) 327, 784
Bso31I GGTCTC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 2 cut(s) 235, 625
Bsp1407I TGTACA 2 cut(s) 45, 285
Bsp143I GATC 2 cut(s) 106, 565
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 327, 784
BspCNI CTCAG 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 381
BsrGI TGTACA 2 cut(s) 45, 285
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 226, 235, 727
BssMI GATC 2 cut(s) 106, 565
BssT1I CCWWGG 2 cut(s) 226, 235
Bst4CI ACNGT 2 cut(s) 125, 317
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 2 cut(s) 45, 285
BstC8I GCNNGC 2 cut(s) 68, 253
BstDEI CTNAG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 152, 346
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 2 cut(s) 109, 568
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 106, 565
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 2 cut(s) 255, 605
BstSCI CCNGG 2 cut(s) 726, 727
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 5 cut(s) 146, 292, 311, 314, 394
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 327, 784
BtsCI GGATG 2 cut(s) 152, 346
BtsIMutI CAGTG 2 cut(s) 322, 534
Cac8I GCNNGC 2 cut(s) 68, 253
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 436
Cfr9I CCCGGG 1 cut(s) 727
Csp6I GTAC 5 cut(s) 46, 286, 348, 599, 664
CviAII CATG 5 cut(s) 164, 252, 351, 547, 602
CviJI RGCY 8 cut(s) 54, 66, 118, 233, 305, 327, 407, 784
CviKI_1 RGCY 8 cut(s) 54, 66, 118, 233, 305, 327, 407, 784
CviQI GTAC 5 cut(s) 46, 286, 348, 599, 664
DdeI CTNAG 1 cut(s) 526
DpnI GATC 2 cut(s) 108, 567
DpnII GATC 2 cut(s) 106, 565
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 226, 235
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 6
Eco47III AGCGCT 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 226, 235
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 226, 235
FaeI CATG 5 cut(s) 167, 255, 354, 550, 605
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 2 cut(s) 406, 688
FatI CATG 5 cut(s) 163, 251, 350, 546, 601
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 5 cut(s) 135, 300, 303, 306, 408
FokI GGATG 2 cut(s) 159, 353
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 5 cut(s) 135, 300, 303, 306, 408
FspBI CTAG 3 cut(s) 236, 294, 554
GlaI GCGC 1 cut(s) 435
GluI GCNGC 5 cut(s) 135, 300, 303, 306, 408
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 2 cut(s) 327, 784
HapII CCGG 1 cut(s) 728
HhaI GCGC 1 cut(s) 436
Hin1II CATG 5 cut(s) 167, 255, 354, 550, 605
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 4 cut(s) 36, 203, 332, 550
HpaII CCGG 1 cut(s) 728
HphI GGTGA 2 cut(s) 164, 220
Hpy166II GTNNAC 3 cut(s) 286, 288, 313
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 3 cut(s) 286, 288, 313
HpyAV CCTTC 2 cut(s) 137, 764
HpyCH4III ACNGT 2 cut(s) 125, 317
HpyCH4V TGCA 6 cut(s) 134, 150, 299, 446, 510, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 526
Hsp92II CATG 5 cut(s) 167, 255, 354, 550, 605
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 2 cut(s) 106, 565
LmnI GCTCC 2 cut(s) 230, 354
LpnPI CCDG 7 cut(s) 80, 128, 132, 195, 446, 534, 741
Lsp1109I GCAGC 5 cut(s) 146, 292, 311, 314, 394
LweI GCATC 2 cut(s) 86, 137
MaeI CTAG 3 cut(s) 236, 294, 554
MaeIII GTNAC 5 cut(s) 208, 317, 329, 469, 773
MalI GATC 2 cut(s) 108, 567
MboI GATC 2 cut(s) 106, 565
MboII GAAGA 7 cut(s) 72, 80, 88, 209, 212, 286, 461
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 235, 625
MluCI AATT 4 cut(s) 138, 383, 440, 707
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 6 cut(s) 68, 270, 492, 535, 579, 654
Mph1103I ATGCAT 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 2 cut(s) 728, 729
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 738
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 2 cut(s) 728, 729
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 106, 565
NlaIII CATG 5 cut(s) 167, 255, 354, 550, 605
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 4 cut(s) 208, 317, 329, 469
NsiI ATGCAT 1 cut(s) 152
NspI RCATGY 2 cut(s) 255, 605
PaeI GCATGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 784
PciI ACATGT 1 cut(s) 601
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 36, 203, 550
PkrI GCNGC 5 cut(s) 136, 301, 304, 307, 409
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 601
PsiI TTATAA 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 5 cut(s) 47, 287, 349, 600, 665
RsaNI GTAC 5 cut(s) 46, 286, 348, 599, 664
RseI CAYNNNNRTG 1 cut(s) 606
SatI GCNGC 5 cut(s) 135, 300, 303, 306, 408
Sau3AI GATC 2 cut(s) 106, 565
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 728, 729
SduI GDGCHC 2 cut(s) 235, 625
SetI ASST 5 cut(s) 56, 307, 377, 665, 775
SfaNI GCATC 2 cut(s) 86, 137
SmaI CCCGGG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 606
SphI GCATGC 1 cut(s) 255
Sse9I AATT 4 cut(s) 138, 383, 440, 707
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 1 cut(s) 308
SspI AATATT 1 cut(s) 243
SspMI CTAG 3 cut(s) 236, 294, 554
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 2 cut(s) 726, 727
StyI CCWWGG 2 cut(s) 226, 235
TaaI ACNGT 2 cut(s) 125, 317
TasI AATT 4 cut(s) 138, 383, 440, 707
TatI WGTACW 3 cut(s) 45, 285, 347
TfiI GAWTC 3 cut(s) 36, 203, 550
TscAI CASTG 2 cut(s) 322, 534
TseFI GTSAC 4 cut(s) 208, 317, 329, 469
TseI GCWGC 5 cut(s) 134, 299, 302, 305, 407
Tsp45I GTSAC 4 cut(s) 208, 317, 329, 469
TspDTI ATGAA 6 cut(s) 287, 357, 387, 471, 663, 711
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 2 cut(s) 322, 534
XapI RAATTY 1 cut(s) 440
XceI RCATGY 2 cut(s) 255, 605
XmaI CCCGGG 1 cut(s) 727
XmaJI CCTAGG 1 cut(s) 235
XspI CTAG 3 cut(s) 236, 294, 554
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.