RchiOBHm_Chr1g0350441

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000382
Physical Location & Seq
Forward (+)
43585683 .. 43586862
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57630

Sequence Viewer

Length: 510 bp
ATGATTTCGAAGACATTGACTGAAAGGGCGGTTCTTGAATTTTCGGAGAAAAATGGATTGGAGGTTGTGACAGTAATTCCTTCTTTTGTTGTTGGCCCCTTCATTTGTCCCAAGTTCCCTGGCTCTGTTCGGACCGCATTGGCTCTGGTTTTAGTGTCTTATGAATCTGCCGGCAACAGGGATGAATATCCTGTTCTTATCAATATATCAGTAGTACATGTGGATGATGTCACCAGAGCACACATTTTCCTTTTCAAACATCATGATACAAAAGGGAGATACAATTGCTCATCAAATGTCATAACAATTAAAGAAATGGCCGAGTTCCTTTCTGCCAAATTCCCTGAATTGCAAATACCTGTAGTAGAGTCATTAAAGGAAGTTAAAGGTCCTAAGTTTCCTGGTCTGTCATCAAAGAAACTCTTGGATTCAGGTTTCGAATTTAAGTATGGGGTTGATGAGATGTTCAGTGAGGCCATTCACTGCTGCAAAGAGAAGGGTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

169

Amino Acids

18.86

Weight (kDa)

6.52

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 2 - 96 7.5e-07 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 135
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 3 cut(s) 38, 338, 440
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 38, 256
AjnI CCWGG 2 cut(s) 118, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
Alw21I GWGCWC 1 cut(s) 241
AoxI GGCC 3 cut(s) 94, 318, 474
ApeKI GCWGC 1 cut(s) 486
ApoI RAATTY 3 cut(s) 38, 338, 440
AspS9I GGNCC 3 cut(s) 95, 132, 389
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 2 cut(s) 8, 438
AvaII GGWCC 2 cut(s) 132, 389
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 473
BciT130I CCWGG 2 cut(s) 120, 402
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
Bme1390I CCNGG 2 cut(s) 120, 402
Bme18I GGWCC 2 cut(s) 132, 389
BmgT120I GGNCC 3 cut(s) 95, 132, 389
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 2 cut(s) 120, 402
BpiI GAAGAC 1 cut(s) 17
Bpu14I TTCGAA 2 cut(s) 8, 438
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 120, 402
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 187, 229
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 473
BshFI GGCC 3 cut(s) 96, 320, 476
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 3 cut(s) 96, 320, 476
Bsp119I TTCGAA 2 cut(s) 8, 438
Bsp1286I GDGCHC 1 cut(s) 241
BspACI CCGC 2 cut(s) 29, 135
BspANI GGCC 3 cut(s) 96, 320, 476
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 97
BspT104I TTCGAA 2 cut(s) 8, 438
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 120, 402
Bst4CI ACNGT 1 cut(s) 73
BstBI TTCGAA 2 cut(s) 8, 438
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 187, 229
BstNI CCWGG 2 cut(s) 120, 402
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 118, 400
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 3 cut(s) 96, 320, 476
BtsCI GGATG 2 cut(s) 187, 229
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 475, 481
Cac8I GCNNGC 1 cut(s) 172
CciI TCATGA 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 95, 132, 389
CpoI CGGWCCG 1 cut(s) 132
Csp6I GTAC 1 cut(s) 215
CspI CGGWCCG 1 cut(s) 132
CviAII CATG 2 cut(s) 218, 263
CviJI RGCY 5 cut(s) 96, 123, 143, 320, 476
CviKI_1 RGCY 5 cut(s) 96, 123, 143, 320, 476
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 393
EaeI YGGCCR 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 132, 389
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 118, 400
FaeI CATG 2 cut(s) 221, 266
FaiI YATR 6 cut(s) 162, 206, 219, 264, 302, 450
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 93
FatI CATG 2 cut(s) 217, 262
Fnu4HI GCNGC 1 cut(s) 487
FokI GGATG 2 cut(s) 194, 236
Fsp4HI GCNGC 1 cut(s) 487
GluI GCNGC 1 cut(s) 487
HaeIII GGCC 3 cut(s) 96, 320, 476
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 221, 266
HinfI GANTC 3 cut(s) 164, 368, 428
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 46, 132
Hpy188III TCNNGA 2 cut(s) 35, 263
HpyAV CCTTC 3 cut(s) 90, 109, 490
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 352, 489
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 221, 266
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 67, 229
MboII GAAGA 1 cut(s) 22
MfeI CAATTG 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 7 cut(s) 38, 75, 283, 306, 338, 347, 440
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 2 cut(s) 55, 466
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 4 cut(s) 309, 374, 384, 444
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 120, 402
MunI CAATTG 1 cut(s) 283
MvaI CCWGG 2 cut(s) 120, 402
NaeI GCCGGC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 221, 266
NlaIV GGNNCC 1 cut(s) 97
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 67, 229
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 2 cut(s) 8, 438
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 164, 428
PkrI GCNGC 1 cut(s) 488
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 389
PscI ACATGT 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 118, 400
PspGI CCWGG 2 cut(s) 118, 400
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 3 cut(s) 95, 132, 389
PspPPI RGGWCCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 132
RsrII CGGWCCG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 309, 374, 384, 444
SatI GCNGC 1 cut(s) 487
Sau96I GGNCC 3 cut(s) 95, 132, 389
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 120, 402
SduI GDGCHC 1 cut(s) 241
SetI ASST 4 cut(s) 66, 361, 391, 436
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 2 cut(s) 8, 438
SinI GGWCC 2 cut(s) 132, 389
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 7 cut(s) 38, 75, 283, 306, 338, 347, 440
SsiI CCGC 2 cut(s) 29, 135
StyD4I CCNGG 2 cut(s) 118, 400
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 8, 438
TasI AATT 7 cut(s) 38, 75, 283, 306, 338, 347, 440
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 2 cut(s) 164, 428
Tru1I TTAA 4 cut(s) 309, 374, 384, 444
Tru9I TTAA 4 cut(s) 309, 374, 384, 444
TscAI CASTG 2 cut(s) 475, 488
TseFI GTSAC 2 cut(s) 67, 229
TseI GCWGC 1 cut(s) 486
Tsp45I GTSAC 2 cut(s) 67, 229
TspDTI ATGAA 3 cut(s) 91, 177, 198
TspRI CASTG 2 cut(s) 475, 488
VpaK11BI GGWCC 2 cut(s) 132, 389
XapI RAATTY 3 cut(s) 38, 338, 440
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.