Rw0G018750

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00847
OG0000382
Physical Location & Seq
Reverse (-)
86456 .. 89420
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018750.1

Sequence Viewer

Length: 999 bp
ATGGAAGGAGAGAGAGGTAGAGTGTGTGTAACGGGAGGTTCAGGGTTTATAGGGTCCTGGTTGATTCTGAGGCTTCTTGAGCATGGTTACTATGTCAATACCACTGTTACATCAGACCCAGAACACAAGAAAGATTTAAGCTTCCTCACAGCTCTACCAGGAGCAGAAGAAAGGCTCCAAATATTCAACGCGGACCTAAGCAACCCTGAAAGTTTCAATGCAGCCATCCAAGGATGCGTTGGAGTGTTCCATGTTGCTACTCCGGTTGACTTCCAAGACAAGGAACTTGAAACCAAGGTTCTAAAAAAGGTAGTGACCAAACGATCAGTCGATGGAGCCTTTGGTATCCTCAAGGCATGCCTATATGCAAAAACAGTGAAACGAGTTGTGTACACTTCTAGTGAGTCTGCTGTTGCATTTAACAACAAGGATGTGGAAGACATGGATGAGAGTTTTTGGAGTGACACAGATTACATTAAAGCTTTAAAGTCATATGGAGGCTCATACGCAATTTCGAAGACATTGACTGAAAGAGCAGTTCTTGAATTTTCGGAGAAAAATGGATTGGATGTTGTGACTGTAATTCCTTCTGTTGTTGTTGGCCCCTTCATTTGTCCCAAGTTCGTCGGCTCTGTTCGAAGCGCATTGGCTCTGGTTTTGGGTAACAAGGATGAATATCCTTTTCTTATCAATTTATCAGTGGTACATGTGGATGATGTCGCTAGAGCGCACATTTTCCTTTTCGAACATCATGATGCAAAAGGGAGATACAATTGTTCATCAAATGTCGTAACAATTGAAAAAATGGCCAAGTTCCTTTCTGCCAAATTCCCCGAATTTCAAATACCCTCAGTAGAGTCATTAAAGGAAGTTAAAGGTCCTAAGTTTCCTGGTCTGTCATCAAAGAAACTCTTGGATTCGGGTTTCAAATTTAAGTATGGGGTTGATGAGATGTTCAGTGAGGCAATTCACTGCTGCATAGTGAAGGGTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

332

Amino Acids

36.64

Weight (kDa)

6.47

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 8 - 259 5.6e-25 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 246 1e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 271 1.3e-12 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 201 4.4e-11 Male sterility protein
NAD_binding_10 PF13460 12 - 139 1.5e-06 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 4 cut(s) 545, 827, 836, 929
AfaI GTAC 2 cut(s) 392, 705
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 7 cut(s) 187, 217, 290, 545, 800, 842, 928
AjnI CCWGG 3 cut(s) 56, 157, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 141, 152, 482
AluI AGCT 3 cut(s) 141, 152, 482
AoxI GGCC 2 cut(s) 601, 807
ApeKI GCWGC 2 cut(s) 221, 975
ApoI RAATTY 4 cut(s) 545, 827, 836, 929
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspLEI GCGC 2 cut(s) 644, 730
AspS9I GGNCC 4 cut(s) 54, 193, 602, 878
AsuII TTCGAA 3 cut(s) 515, 637, 744
AvaII GGWCC 3 cut(s) 54, 193, 878
BaeI ACNNNNGTAYC 2 cut(s) 760, 793
BalI TGGCCA 1 cut(s) 809
BbsI GAAGAC 2 cut(s) 444, 524
BbvI GCAGC 2 cut(s) 233, 962
BccI CCATC 2 cut(s) 233, 326
BciT130I CCWGG 3 cut(s) 58, 159, 891
BciVI GTATCC 1 cut(s) 356
BfaI CTAG 2 cut(s) 399, 723
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 2 cut(s) 222, 976
BlsI GCNGC 2 cut(s) 223, 977
Bme1390I CCNGG 3 cut(s) 58, 159, 891
Bme18I GGWCC 3 cut(s) 54, 193, 878
BmgT120I GGNCC 4 cut(s) 54, 193, 602, 878
BmiI GGNNCC 4 cut(s) 55, 176, 337, 604
BmrFI CCNGG 3 cut(s) 58, 159, 891
BmsI GCATC 2 cut(s) 224, 745
BpiI GAAGAC 2 cut(s) 444, 524
Bpu10I CCTNAGC 1 cut(s) 197
Bpu14I TTCGAA 3 cut(s) 515, 637, 744
BpuEI CTTGAG 2 cut(s) 98, 335
BsaBI GATNNNNATC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 229, 294
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 3 cut(s) 58, 159, 891
BseDI CCNNGG 2 cut(s) 229, 294
BseGI GGATG 7 cut(s) 225, 239, 436, 451, 574, 676, 718
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 59, 864
BseXI GCAGC 2 cut(s) 233, 962
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 603, 809
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 2 cut(s) 603, 809
Bsp119I TTCGAA 3 cut(s) 515, 637, 744
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 1 cut(s) 323
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 603, 809
BspCNI CTCAG 2 cut(s) 60, 863
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 4 cut(s) 55, 176, 337, 604
BspT104I TTCGAA 3 cut(s) 515, 637, 744
BsrGI TGTACA 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 229, 294
BssMI GATC 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 229, 294
Bst2UI CCWGG 3 cut(s) 58, 159, 891
Bst4CI ACNGT 3 cut(s) 106, 376, 580
BstAUI TGTACA 1 cut(s) 390
BstBI TTCGAA 3 cut(s) 515, 637, 744
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 4 cut(s) 68, 197, 850, 882
BstF5I GGATG 7 cut(s) 225, 239, 436, 451, 574, 676, 718
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 644, 730
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 58, 159, 891
BstNSI RCATGY 2 cut(s) 360, 710
BstSCI CCNGG 3 cut(s) 56, 157, 889
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 233, 962
BstV2I GAAGAC 2 cut(s) 444, 524
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 2 cut(s) 603, 809
BtsCI GGATG 7 cut(s) 225, 239, 436, 451, 574, 676, 718
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 5 cut(s) 102, 381, 705, 964, 970
Cac8I GCNNGC 1 cut(s) 358
CciI TCATGA 1 cut(s) 751
CfoI GCGC 2 cut(s) 644, 730
Cfr13I GGNCC 4 cut(s) 54, 193, 602, 878
Csp6I GTAC 2 cut(s) 391, 704
CviAII CATG 6 cut(s) 83, 251, 357, 442, 707, 752
CviQI GTAC 2 cut(s) 391, 704
DdeI CTNAG 4 cut(s) 68, 197, 850, 882
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
DraI TTTAAA 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 807
Eco130I CCWWGG 2 cut(s) 229, 294
Eco47I GGWCC 3 cut(s) 54, 193, 878
EcoO109I RGGNCCY 2 cut(s) 54, 878
EcoRII CCWGG 3 cut(s) 56, 157, 889
EcoT14I CCWWGG 2 cut(s) 229, 294
ErhI CCWWGG 2 cut(s) 229, 294
FaeI CATG 6 cut(s) 86, 254, 360, 445, 710, 755
FalI AAGNNNNNCTT 2 cut(s) 896, 928
FaqI GGGAC 1 cut(s) 600
FatI CATG 6 cut(s) 82, 250, 356, 441, 706, 751
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 2 cut(s) 222, 976
FokI GGATG 7 cut(s) 212, 246, 443, 458, 581, 683, 725
Fsp4HI GCNGC 2 cut(s) 222, 976
FspBI CTAG 2 cut(s) 399, 723
GlaI GCGC 2 cut(s) 643, 729
GluI GCNGC 2 cut(s) 222, 976
HaeIII GGCC 2 cut(s) 603, 809
HapII CCGG 1 cut(s) 263
HhaI GCGC 2 cut(s) 644, 730
Hin1II CATG 6 cut(s) 86, 254, 360, 445, 710, 755
Hin6I GCGC 2 cut(s) 642, 728
HinP1I GCGC 2 cut(s) 642, 728
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 139, 480
HinfI GANTC 4 cut(s) 64, 404, 857, 917
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 268, 391, 393
Hpy188I TCNGA 3 cut(s) 69, 115, 553
Hpy188III TCNNGA 3 cut(s) 77, 542, 752
Hpy8I GTNNAC 3 cut(s) 268, 391, 393
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 3 cut(s) 597, 616, 979
HpyCH4III ACNGT 3 cut(s) 106, 376, 580
HpyCH4V TGCA 5 cut(s) 221, 368, 416, 758, 978
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 4 cut(s) 68, 197, 850, 882
Hsp92II CATG 6 cut(s) 86, 254, 360, 445, 710, 755
HspAI GCGC 2 cut(s) 642, 728
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 161, 180, 335
Lsp1109I GCAGC 2 cut(s) 233, 962
LweI GCATC 2 cut(s) 224, 745
MaeI CTAG 2 cut(s) 399, 723
MaeIII GTNAC 8 cut(s) 28, 86, 106, 313, 461, 574, 662, 790
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 3 cut(s) 179, 449, 529
MfeI CAATTG 2 cut(s) 772, 795
MlsI TGGCCA 1 cut(s) 809
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 2 cut(s) 413, 866
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 8 cut(s) 8, 29, 63, 155, 359, 491, 859, 955
Mox20I TGGCCA 1 cut(s) 809
MscI TGGCCA 1 cut(s) 809
MseI TTAA 7 cut(s) 137, 420, 477, 485, 863, 873, 933
MslI CAYNNNNRTG 2 cut(s) 711, 753
Msp20I TGGCCA 1 cut(s) 809
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 3 cut(s) 58, 159, 891
MunI CAATTG 2 cut(s) 772, 795
MvaI CCWGG 3 cut(s) 58, 159, 891
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeI CATATG 1 cut(s) 493
NdeII GATC 1 cut(s) 323
NlaIII CATG 6 cut(s) 86, 254, 360, 445, 710, 755
NlaIV GGNNCC 4 cut(s) 55, 176, 337, 604
NmuCI GTSAC 3 cut(s) 313, 461, 574
NspI RCATGY 2 cut(s) 360, 710
NspV TTCGAA 3 cut(s) 515, 637, 744
PaeI GCATGC 1 cut(s) 360
PagI TCATGA 1 cut(s) 751
PciI ACATGT 1 cut(s) 706
PfeI GAWTC 2 cut(s) 64, 917
PkrI GCNGC 2 cut(s) 223, 977
PleI GAGTC 2 cut(s) 412, 865
PpsI GAGTC 2 cut(s) 412, 865
PpuMI RGGWCCY 2 cut(s) 54, 878
PscI ACATGT 1 cut(s) 706
Psp5II RGGWCCY 2 cut(s) 54, 878
Psp6I CCWGG 3 cut(s) 56, 157, 889
PspGI CCWGG 3 cut(s) 56, 157, 889
PspN4I GGNNCC 4 cut(s) 55, 176, 337, 604
PspPI GGNCC 4 cut(s) 54, 193, 602, 878
PspPPI RGGWCCY 2 cut(s) 54, 878
RsaI GTAC 2 cut(s) 392, 705
RsaNI GTAC 2 cut(s) 391, 704
RseI CAYNNNNRTG 2 cut(s) 711, 753
SaqAI TTAA 7 cut(s) 137, 420, 477, 485, 863, 873, 933
SatI GCNGC 2 cut(s) 222, 976
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 4 cut(s) 54, 193, 602, 878
SchI GAGTC 2 cut(s) 413, 866
ScrFI CCNGG 3 cut(s) 58, 159, 891
SetI ASST 9 cut(s) 19, 40, 143, 154, 198, 300, 312, 484, 880
SfaNI GCATC 2 cut(s) 224, 745
SfuI TTCGAA 3 cut(s) 515, 637, 744
SinI GGWCC 3 cut(s) 54, 193, 878
SmiMI CAYNNNNRTG 2 cut(s) 711, 753
SmlI CTYRAG 2 cut(s) 77, 350
SmoI CTYRAG 2 cut(s) 77, 350
SphI GCATGC 1 cut(s) 360
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 183
SspMI CTAG 2 cut(s) 399, 723
StyD4I CCNGG 3 cut(s) 56, 157, 889
StyI CCWWGG 2 cut(s) 229, 294
TaaI ACNGT 3 cut(s) 106, 376, 580
TaqI TCGA 4 cut(s) 330, 515, 637, 744
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 64, 917
Tru1I TTAA 7 cut(s) 137, 420, 477, 485, 863, 873, 933
Tru9I TTAA 7 cut(s) 137, 420, 477, 485, 863, 873, 933
TscAI CASTG 5 cut(s) 109, 381, 705, 964, 977
TseFI GTSAC 3 cut(s) 313, 461, 574
TseI GCWGC 2 cut(s) 221, 975
Tsp45I GTSAC 3 cut(s) 313, 461, 574
TspDTI ATGAA 3 cut(s) 598, 687, 768
TspRI CASTG 5 cut(s) 109, 381, 705, 964, 977
VpaK11BI GGWCC 3 cut(s) 54, 193, 878
XapI RAATTY 4 cut(s) 545, 827, 836, 929
XceI RCATGY 2 cut(s) 360, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 2 cut(s) 399, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.