Rh1DG222300

Male sterility protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
43215499 .. 43217455
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG222300.1

Sequence Viewer

Length: 897 bp
ATGAGCTTGTATATGTTCCATTTGTTTATGGCAGAAGGCAAGAGAGATATCAGCTACCTGACAAGCCTTCCAGGAGCACAAGAGAAACTCCAAATCTTCCATGCAGATCTCAACAACCCCGAGACCTTCAACGACGCCATCCAAGGCTGCACCGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGCAAAGAACCCGAGGAAACCGTAACCAAACGAGCCCTGGAAGGAACACTAGGCATTTTGAAGGCATGCCTAAGTTGCAAGACGGTGAGGCGAGTGGTTTACACATCCAGTTTGGCCACAATATTGTACAACAGCAAGCGTCTTGAAGAAACTGATGAAAACACATGGAGTGAGGTTGATGTATGCAGAAGTAACAAGCTTGTGAGCTCTTCTTACTTGGTTTCCAAGACTCTGGTGGAGAGGACAGCCCTGGAATTTGCAGAGAGGAATGGTTGGGATCTTGTCACTGTGGTTTTGCCTATAGTAGTTGGACCCTTCGTTTGTCCAAATGTTCCTGCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTGACCAAGAGCAATGTAAATATCTTGTTAGCACATATATGGTGCACATAGATGATGTGGCGAGTGCCCATATCTTCCTTCTTGAACATGCTAATGCAAAAGGGAGGTACATTTGTTCGTCGATCCAAACAACGATTCATGAGTTATATGACTTTCTTTCCGCAAGATACCCAGAACTTCATATATCAATACCAGATCAGTTAATGGAGATTAAAGATTACAAAGGAACTAATGTATTTTCAATGAAACTGTTGAATACTGGCTTCAAATTTAAATACTGCCTTGGGGAAATGTTTGATGGCGCTATTCAATCTTGCAAAGAGAAGGGTTTTCTATAA

Protein Analysis

298

Amino Acids

33.55

Weight (kDa)

5.62

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 9 - 220 2.9e-15 NAD dependent epimerase/dehydratase family
NAD_binding_4 PF07993 28 - 167 3.7e-07 Male sterility protein
3Beta_HSD PF01073 32 - 162 9.2e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 720
AclWI GGATC 2 cut(s) 474, 676
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 2 cut(s) 443, 827
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 3 cut(s) 317, 536, 668
AfiI CCNNNNNNNGG 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 9 cut(s) 130, 188, 250, 335, 644, 801, 814, 826, 869
AjnI CCWGG 3 cut(s) 70, 225, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 4 cut(s) 6, 54, 388, 396
AluI AGCT 4 cut(s) 6, 54, 388, 396
Alw21I GWGCWC 3 cut(s) 79, 398, 606
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 2 cut(s) 474, 676
Ama87I CYCGRG 2 cut(s) 119, 200
AoxI GGCC 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 602
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 443, 827
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 164, 286, 572
AvaI CYCGRG 2 cut(s) 119, 200
AvaII GGWCC 1 cut(s) 500
BaeGI GKGCMC 2 cut(s) 606, 628
BaeI ACNNNNGTAYC 2 cut(s) 658, 691
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 2 cut(s) 226, 398
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 3 cut(s) 79, 398, 606
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 146, 851
BciT130I CCWGG 3 cut(s) 72, 227, 440
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 864
BglII AGATCT 1 cut(s) 106
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 72, 227, 440
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 2 cut(s) 119, 200
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 502, 549
BmrFI CCNGG 3 cut(s) 72, 227, 440
BpiI GAAGAC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 6 cut(s) 142, 177, 201, 225, 438, 841
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 297, 823
Bse3DI GCAATG 1 cut(s) 578
BseBI CCWGG 3 cut(s) 72, 227, 440
BseDI CCNNGG 6 cut(s) 142, 177, 201, 225, 438, 841
BseGI GGATG 2 cut(s) 138, 293
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMI GCAATG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 297, 823
BseSI GKGCMC 2 cut(s) 606, 628
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 305
BshTI ACCGGT 1 cut(s) 152
BsiHKAI GWGCWC 3 cut(s) 79, 398, 606
BsiHKCI CYCGRG 2 cut(s) 119, 200
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 119, 200
Bsp1286I GDGCHC 5 cut(s) 79, 226, 398, 606, 628
Bsp1407I TGTACA 2 cut(s) 315, 534
Bsp143I GATC 4 cut(s) 106, 466, 681, 754
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 1 cut(s) 720
BspANI GGCC 1 cut(s) 305
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 2 cut(s) 502, 549
BspPI GGATC 2 cut(s) 474, 676
BspQI GCTCTTC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 2 cut(s) 315, 534
BsrI ACTGG 2 cut(s) 297, 823
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 142, 177, 201, 225, 438, 841
BssMI GATC 4 cut(s) 106, 466, 681, 754
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 3 cut(s) 142, 177, 841
Bst2UI CCWGG 3 cut(s) 72, 227, 440
Bst4CI ACNGT 4 cut(s) 211, 274, 478, 810
Bst6I CTCTTC 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 135
BstAUI TGTACA 2 cut(s) 315, 534
BstC8I GCNNGC 2 cut(s) 256, 326
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 2 cut(s) 138, 293
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 4 cut(s) 109, 469, 684, 757
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 4 cut(s) 106, 466, 681, 754
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 3 cut(s) 72, 227, 440
BstNSI RCATGY 2 cut(s) 258, 650
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 70, 225, 438
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 606, 628
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 106, 466
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 2 cut(s) 106, 466
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 138, 293
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 256, 326
CciI TCATGA 1 cut(s) 697
CfoI GCGC 1 cut(s) 863
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 2 cut(s) 143, 317
Csp6I GTAC 3 cut(s) 316, 535, 667
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 8 cut(s) 101, 178, 255, 354, 538, 544, 647, 698
CviQI GTAC 3 cut(s) 316, 535, 667
DdeI CTNAG 1 cut(s) 260
DpnI GATC 4 cut(s) 108, 468, 683, 756
DpnII GATC 4 cut(s) 106, 466, 681, 754
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 3 cut(s) 142, 177, 841
Eco24I GRGCYC 2 cut(s) 226, 398
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 119, 200
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 560
EcoRII CCWGG 3 cut(s) 70, 225, 438
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 3 cut(s) 142, 177, 841
EcoT38I GRGCYC 2 cut(s) 226, 398
ErhI CCWWGG 3 cut(s) 142, 177, 841
FaeI CATG 8 cut(s) 104, 181, 258, 357, 541, 547, 650, 701
FatI CATG 8 cut(s) 100, 177, 254, 353, 537, 543, 646, 697
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 125, 280
FriOI GRGCYC 2 cut(s) 226, 398
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 862
GluI GCNGC 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 1 cut(s) 305
HapII CCGG 1 cut(s) 153
HgaI GACGC 2 cut(s) 143, 317
HhaI GCGC 1 cut(s) 863
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 8 cut(s) 104, 181, 258, 357, 541, 547, 650, 701
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 2 cut(s) 418, 694
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 164, 286, 572
Hpy166II GTNNAC 3 cut(s) 289, 535, 604
Hpy188III TCNNGA 3 cut(s) 332, 641, 698
Hpy8I GTNNAC 3 cut(s) 289, 535, 604
Hpy99I CGWCG 2 cut(s) 137, 682
HpyAV CCTTC 9 cut(s) 29, 77, 136, 182, 224, 244, 514, 647, 877
HpyCH4III ACNGT 4 cut(s) 211, 274, 478, 810
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 8 cut(s) 104, 150, 267, 375, 449, 604, 656, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 8 cut(s) 104, 181, 258, 357, 541, 547, 650, 701
HspAI GCGC 1 cut(s) 861
Kzo9I GATC 4 cut(s) 106, 466, 681, 754
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 74, 553
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 211, 380, 472, 560
MalI GATC 4 cut(s) 108, 468, 683, 756
MboI GATC 4 cut(s) 106, 466, 681, 754
MboII GAAGA 5 cut(s) 88, 151, 347, 390, 625
MflI RGATCY 2 cut(s) 106, 466
MhlI GDGCHC 5 cut(s) 79, 226, 398, 606, 628
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 2 cut(s) 443, 827
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 6 cut(s) 196, 270, 355, 423, 447, 657
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 3 cut(s) 761, 771, 831
MslI CAYNNNNRTG 4 cut(s) 542, 596, 609, 651
Msp20I TGGCCA 1 cut(s) 305
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 72, 227, 440
MvaI CCWGG 3 cut(s) 72, 227, 440
MwoI GCNNNNNNNGC 1 cut(s) 264
NcoI CCATGG 1 cut(s) 177
NdeII GATC 4 cut(s) 106, 466, 681, 754
NlaIII CATG 8 cut(s) 104, 181, 258, 357, 541, 547, 650, 701
NlaIV GGNNCC 2 cut(s) 502, 549
NmuCI GTSAC 2 cut(s) 472, 560
NspI RCATGY 2 cut(s) 258, 650
PaeI GCATGC 1 cut(s) 258
PagI TCATGA 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 70, 225, 438
PspEI GGTNACC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 70, 225, 438
PspN4I GGNNCC 2 cut(s) 502, 549
PspPI GGNCC 1 cut(s) 500
PsuI RGATCY 2 cut(s) 106, 466
RsaI GTAC 3 cut(s) 317, 536, 668
RsaNI GTAC 3 cut(s) 316, 535, 667
RseI CAYNNNNRTG 4 cut(s) 542, 596, 609, 651
SacI GAGCTC 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 761, 771, 831
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 4 cut(s) 106, 466, 681, 754
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 3 cut(s) 72, 227, 440
SduI GDGCHC 5 cut(s) 79, 226, 398, 606, 628
SfcI CTRYAG 1 cut(s) 489
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 500
SmiI ATTTAAAT 1 cut(s) 832
SmiMI CAYNNNNRTG 4 cut(s) 542, 596, 609, 651
SphI GCATGC 1 cut(s) 258
Sse9I AATT 2 cut(s) 443, 827
SsiI CCGC 1 cut(s) 720
SspI AATATT 1 cut(s) 312
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 70, 225, 438
StyI CCWWGG 3 cut(s) 142, 177, 841
SwaI ATTTAAAT 1 cut(s) 832
TaaI ACNGT 4 cut(s) 211, 274, 478, 810
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 680
TasI AATT 2 cut(s) 443, 827
TatI WGTACW 2 cut(s) 315, 534
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 3 cut(s) 761, 771, 831
Tru9I TTAA 3 cut(s) 761, 771, 831
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 2 cut(s) 472, 560
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 2 cut(s) 472, 560
TspDTI ATGAA 4 cut(s) 360, 686, 728, 818
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 2 cut(s) 443, 827
XceI RCATGY 2 cut(s) 258, 650
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 421
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.