Rh3DG280100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000382
Physical Location & Seq
Forward (+)
28467335 .. 28467685
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG280100.1

Sequence Viewer

Length: 351 bp
ATGAATGATCATGACGATTTGCTCGAGAATGCGAATGTTGTTGCTCTCATGACCTCAGTCGCCAGCATTGCCGCCGCTGCCGAGAGCCACCACGAGCAGCGTAACAAACCCTTCGCACTTGGCGAGAAACTTCATGTTCTCTTCCAACTCCTTGGCGAACCGTGCAATCTTCACCAACGAATCCACAGAGGAGGAGCTGTGGTGGTCCATCTGTTGAATCAGCTCCACCACCTGGTCTTTCGAGTGGCTGGTGTTATCGATTTTGAATCGCTCCTTTTGGAGACGGACCGATTCAGACCAGATCTGTATGAGGTGGTGGAGAGTGCGGTTGGGCACGAAGTCCCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

5.73

Isoelectric Point (pI)

18.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 232
AciI CCGC 3 cut(s) 72, 75, 326
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 217, 266
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 2 cut(s) 197, 223
AluI AGCT 2 cut(s) 197, 223
Alw26I GTCTC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 77, 97
AspS9I GGNCC 2 cut(s) 205, 286
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 205, 286
BaeGI GKGCMC 1 cut(s) 336
BauI CACGAG 1 cut(s) 92
BbvI GCAGC 2 cut(s) 64, 109
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 275
BglII AGATCT 1 cut(s) 301
BisI GCNGC 4 cut(s) 72, 75, 78, 98
BlsI GCNGC 4 cut(s) 73, 76, 79, 99
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 205, 286
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 205, 286
BmrFI CCNGG 1 cut(s) 233
BoxI GACNNNNGTC 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 4 cut(s) 183, 186, 213, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 233
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 2 cut(s) 204, 207
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 64, 109
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 7, 301
BspACI CCGC 3 cut(s) 72, 75, 326
BspCNI CTCAG 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 2 cut(s) 10, 48
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 7, 301
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 55
BstKTI GATC 2 cut(s) 10, 304
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 7, 301
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 162
BstNI CCWGG 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 64, 109
BstX2I RGATCY 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 2 cut(s) 10, 48
Cfr13I GGNCC 2 cut(s) 205, 286
ClaI ATCGAT 1 cut(s) 258
CpoI CGGWCCG 1 cut(s) 286
CsiI ACCWGGT 1 cut(s) 231
CspI CGGWCCG 1 cut(s) 286
CviAII CATG 3 cut(s) 11, 49, 134
CviJI RGCY 4 cut(s) 87, 197, 223, 248
CviKI_1 RGCY 4 cut(s) 87, 197, 223, 248
DdeI CTNAG 1 cut(s) 55
DpnI GATC 2 cut(s) 9, 303
DpnII GATC 2 cut(s) 7, 301
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 205, 286
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 3 cut(s) 14, 52, 137
FaiI YATR 4 cut(s) 12, 50, 135, 309
FaqI GGGAC 1 cut(s) 326
FatI CATG 3 cut(s) 10, 48, 133
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 72, 75, 78, 98
Fsp4HI GCNGC 4 cut(s) 72, 75, 78, 98
GluI GCNGC 4 cut(s) 72, 75, 78, 98
Hin1II CATG 3 cut(s) 14, 52, 137
HinfI GANTC 4 cut(s) 180, 217, 266, 291
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 3 cut(s) 11, 25, 49
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 162
HpyF3I CTNAG 1 cut(s) 55
Hsp92II CATG 3 cut(s) 14, 52, 137
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 301
LmnI GCTCC 3 cut(s) 194, 228, 276
LpnPI CCDG 5 cut(s) 76, 218, 234, 245, 312
Lsp1109I GCAGC 2 cut(s) 64, 109
MabI ACCWGGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 9, 303
MboI GATC 2 cut(s) 7, 301
MboII GAAGA 2 cut(s) 133, 161
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 4 cut(s) 64, 182, 185, 304
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 162
NdeII GATC 2 cut(s) 7, 301
NlaIII CATG 3 cut(s) 14, 52, 137
NmeAIII GCCGAG 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 2 cut(s) 10, 48
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 120
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 4 cut(s) 180, 217, 266, 291
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 4 cut(s) 73, 76, 79, 99
PshAI GACNNNNGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 2 cut(s) 205, 286
PsuI RGATCY 1 cut(s) 301
Rsr2I CGGWCCG 1 cut(s) 286
RsrII CGGWCCG 1 cut(s) 286
SatI GCNGC 4 cut(s) 72, 75, 78, 98
Sau3AI GATC 2 cut(s) 7, 301
Sau96I GGNCC 2 cut(s) 205, 286
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 336
SetI ASST 5 cut(s) 56, 199, 225, 234, 315
SexAI ACCWGGT 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 2 cut(s) 205, 286
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 3 cut(s) 72, 75, 326
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 24, 241, 258
TaqII GACCGA 1 cut(s) 303
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 4 cut(s) 180, 217, 266, 291
TseI GCWGC 2 cut(s) 77, 97
TspDTI ATGAA 2 cut(s) 17, 122
TspGWI ACGGA 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 205, 286
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.