Prupe.2G144800_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000382
Physical Location & Seq
Forward (+)
20171667 .. 20174320
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G144800.1

Sequence Viewer

Length: 987 bp
ATGGAGGGAGAGAAAGGAAGAGTATGTGTAACAGGTGGTTCAGGGTTTATAGGGTCTTGGCTGGTCATGAGGCTCCTTGATCATGGCTACTCTGTCAACACCACTGTCAGATCAGACCCAGAGAACAAGAAAGATCTAAGCTTCCTCACAAGTCTACCAGGAGCATCGGCACGGCTAAAAATTTTCAATGCGGATCTCAGCATCCCAGAAAGTTTCAATGCAGCCGTTGAAGGATGCATCGGATTGTTCCATGTTGCTACTCCAGTTGACTTCCAAGATAAGGAACCTGAAGAAGTGGTGACCAAAAGATCAATTGATGGAGCCCTTGGCATTCTAAAGGCATGCTTAAATTCGAAAACTGTGAAACGAGTTGTATACACCTCGAGCGCATCTGCTGTCATGTTGGGCAGCAAGGATTATGTAGAGGAACTGGATGAGAGCTTTTGGAGTGACATAGATTACATTAAAGCCGTCAAGCCATATGGAGGCTCATACATGATTTCAAAGACATTAACTGAAAGGGCAGTTCTTGAATTTTCAGAGAAATATGGATTGGATGTTGTGACAGTAATTCCTTCTTTTGTTGTTGGCCCATTCATTTGTCCTAAGCTCCCCGGCTCTGTTCAAACCATTTTGTCTCTTGCATTTGGTGACTTTGATCAACTTAGCTTTATCATCAATACATCTGTGGTGCATGTGGATGATGTTGCCAGAGCACACATTTTCCTTTTTGAACATCATGAGGCCAACGGGAGATACAATTGTTCTGCAGATGTCATAACACTTGTACAAATAGCTGAATTAATCTCTGCAAAATACCCGGAAGCTCGAATACCGTCAGTAGATGATTTAAGTAGAGTTGAAGGTCCGAAATTTTCTGGTCTGTCATCAAAGAAGCTATTGGATGCTGGTTTCAAATTCAAGTATGGGGTTGATGAGATGTTCAGTGATGCAATTCAATGCTGCAGAGAAAAGCATTATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

329

Amino Acids

36.01

Weight (kDa)

5.36

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 154, 375
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 5 cut(s) 180, 349, 533, 872, 917
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 789
AfiI CCNNNNNNNGG 2 cut(s) 280, 485
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 7 cut(s) 141, 441, 610, 669, 797, 827, 898
AluI AGCT 7 cut(s) 141, 441, 610, 669, 797, 827, 898
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 2 cut(s) 589, 744
ApeKI GCWGC 3 cut(s) 221, 408, 963
ApoI RAATTY 5 cut(s) 180, 349, 533, 872, 917
AseI ATTAAT 1 cut(s) 803
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 590, 866
AsuC2I CCSGG 2 cut(s) 615, 821
AsuHPI GGTGA 2 cut(s) 310, 662
AsuII TTCGAA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 866
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BanII GRGCYC 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 3 cut(s) 233, 420, 950
BccI CCATC 1 cut(s) 311
BceAI ACGGC 3 cut(s) 188, 209, 455
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 2 cut(s) 79, 658
BcnI CCSGG 2 cut(s) 615, 821
BcoDI GTCTC 1 cut(s) 642
BfmI CTRYAG 3 cut(s) 768, 964, 983
BglII AGATCT 1 cut(s) 133
BisI GCNGC 3 cut(s) 222, 409, 964
BlsI GCNGC 3 cut(s) 223, 410, 965
Bme1390I CCNGG 3 cut(s) 159, 615, 821
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 590, 866
BmiI GGNNCC 3 cut(s) 74, 285, 322
BmrFI CCNGG 3 cut(s) 159, 615, 821
BmsI GCATC 7 cut(s) 173, 210, 224, 246, 398, 895, 940
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 615, 821
BsaJI CCNNGG 2 cut(s) 325, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 485
Bse1I ACTGG 2 cut(s) 263, 435
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 325, 613
BseGI GGATG 6 cut(s) 201, 239, 439, 562, 706, 910
BseLI CCNNNNNNNGG 2 cut(s) 280, 485
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 263, 435
BseXI GCAGC 3 cut(s) 233, 420, 950
BshFI GGCC 2 cut(s) 591, 746
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 615, 821
BslI CCNNNNNNNGG 2 cut(s) 280, 485
BsmAI GTCTC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 591, 746
BsoBI CYCGRG 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 325, 718
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 6 cut(s) 79, 110, 133, 193, 308, 658
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 591, 746
BspCNI CTCAG 1 cut(s) 210
BspHI TCATGA 2 cut(s) 66, 739
BspLI GGNNCC 3 cut(s) 74, 285, 322
BspMAI CTGCAG 2 cut(s) 772, 968
BspPI GGATC 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 2 cut(s) 263, 435
BssECI CCNNGG 2 cut(s) 325, 613
BssMI GATC 6 cut(s) 79, 110, 133, 193, 308, 658
BssNAI GTATAC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 4 cut(s) 106, 361, 568, 837
Bst6I CTCTTC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 787
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 4 cut(s) 137, 197, 606, 665
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 6 cut(s) 201, 239, 439, 562, 706, 910
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 6 cut(s) 82, 113, 136, 196, 311, 661
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 6 cut(s) 79, 110, 133, 193, 308, 658
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 2 cut(s) 345, 698
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 157, 613, 819
BstSFI CTRYAG 3 cut(s) 768, 964, 983
BstV1I GCAGC 3 cut(s) 233, 420, 950
BstX2I RGATCY 2 cut(s) 133, 193
BstYI RGATCY 2 cut(s) 133, 193
BstZ17I GTATAC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 591, 746
BtsCI GGATG 6 cut(s) 201, 239, 439, 562, 706, 910
BtsIMutI CAGTG 2 cut(s) 102, 952
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 2 cut(s) 66, 739
CfoI GCGC 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 590, 866
Csp6I GTAC 1 cut(s) 788
CviAII CATG 8 cut(s) 67, 83, 251, 342, 400, 496, 695, 740
CviQI GTAC 1 cut(s) 788
DdeI CTNAG 4 cut(s) 137, 197, 606, 665
DpnI GATC 6 cut(s) 81, 112, 135, 195, 310, 660
DpnII GATC 6 cut(s) 79, 110, 133, 193, 308, 658
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 8 cut(s) 70, 86, 254, 345, 403, 499, 698, 743
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 8 cut(s) 66, 82, 250, 341, 399, 495, 694, 739
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 2 cut(s) 79, 658
FblI GTMKAC 2 cut(s) 154, 375
Fnu4HI GCNGC 3 cut(s) 222, 409, 964
FokI GGATG 6 cut(s) 188, 246, 446, 569, 713, 917
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 222, 409, 964
GlaI GCGC 1 cut(s) 388
GluI GCNGC 3 cut(s) 222, 409, 964
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 591, 746
HapII CCGG 2 cut(s) 615, 821
HhaI GCGC 1 cut(s) 389
Hin1II CATG 8 cut(s) 70, 86, 254, 345, 403, 499, 698, 743
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 2 cut(s) 97, 268
HindII GTYRAC 2 cut(s) 97, 268
HindIII AAGCTT 1 cut(s) 139
HpaII CCGG 2 cut(s) 615, 821
HphI GGTGA 2 cut(s) 310, 662
Hpy166II GTNNAC 4 cut(s) 97, 155, 268, 376
Hpy188I TCNGA 5 cut(s) 110, 115, 242, 541, 870
Hpy188III TCNNGA 3 cut(s) 67, 530, 740
Hpy8I GTNNAC 4 cut(s) 97, 155, 268, 376
HpyAV CCTTC 3 cut(s) 224, 585, 857
HpyCH4III ACNGT 4 cut(s) 106, 361, 568, 837
HpyCH4V TGCA 8 cut(s) 221, 237, 644, 694, 770, 812, 953, 966
HpyF3I CTNAG 4 cut(s) 137, 197, 606, 665
Hsp92II CATG 8 cut(s) 70, 86, 254, 345, 403, 499, 698, 743
HspAI GCGC 1 cut(s) 387
Ksp22I TGATCA 2 cut(s) 79, 658
Kzo9I GATC 6 cut(s) 79, 110, 133, 193, 308, 658
LmnI GCTCC 4 cut(s) 78, 161, 320, 615
Lsp1109I GCAGC 3 cut(s) 233, 420, 950
LweI GCATC 7 cut(s) 173, 210, 224, 246, 398, 895, 940
MaeIII GTNAC 5 cut(s) 28, 298, 449, 562, 650
MalI GATC 6 cut(s) 81, 112, 135, 195, 310, 660
MboI GATC 6 cut(s) 79, 110, 133, 193, 308, 658
MboII GAAGA 2 cut(s) 30, 302
MfeI CAATTG 2 cut(s) 312, 760
MflI RGATCY 2 cut(s) 133, 193
MhlI GDGCHC 2 cut(s) 325, 718
MnlI CCTC 6 cut(s) 63, 155, 391, 418, 479, 736
Mph1103I ATGCAT 1 cut(s) 239
MseI TTAA 5 cut(s) 347, 465, 512, 803, 851
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 2 cut(s) 615, 821
MspR9I CCNGG 3 cut(s) 159, 615, 821
MunI CAATTG 2 cut(s) 312, 760
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 159
NciI CCSGG 2 cut(s) 615, 821
NdeI CATATG 1 cut(s) 481
NdeII GATC 6 cut(s) 79, 110, 133, 193, 308, 658
NlaIII CATG 8 cut(s) 70, 86, 254, 345, 403, 499, 698, 743
NlaIV GGNNCC 3 cut(s) 74, 285, 322
NmuCI GTSAC 4 cut(s) 298, 449, 562, 650
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 2 cut(s) 345, 698
NspV TTCGAA 1 cut(s) 353
PaeI GCATGC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 382
PagI TCATGA 2 cut(s) 66, 739
PctI GAATGC 1 cut(s) 330
PkrI GCNGC 3 cut(s) 223, 410, 965
PshBI ATTAAT 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 74, 285, 322
PspPI GGNCC 2 cut(s) 590, 866
PspXI VCTCGAGB 1 cut(s) 382
PstI CTGCAG 2 cut(s) 772, 968
PsuI RGATCY 2 cut(s) 133, 193
RsaI GTAC 1 cut(s) 789
RsaNI GTAC 1 cut(s) 788
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 5 cut(s) 347, 465, 512, 803, 851
SatI GCNGC 3 cut(s) 222, 409, 964
Sau3AI GATC 6 cut(s) 79, 110, 133, 193, 308, 658
Sau96I GGNCC 2 cut(s) 590, 866
ScrFI CCNGG 3 cut(s) 159, 615, 821
SduI GDGCHC 2 cut(s) 325, 718
SfaNI GCATC 7 cut(s) 173, 210, 224, 246, 398, 895, 940
SfcI CTRYAG 3 cut(s) 768, 964, 983
Sfr274I CTCGAG 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 1 cut(s) 866
SlaI CTCGAG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SphI GCATGC 1 cut(s) 345
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 157, 613, 819
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 4 cut(s) 106, 361, 568, 837
TaqI TCGA 3 cut(s) 353, 383, 829
TatI WGTACW 1 cut(s) 787
Tru1I TTAA 5 cut(s) 347, 465, 512, 803, 851
Tru9I TTAA 5 cut(s) 347, 465, 512, 803, 851
TscAI CASTG 2 cut(s) 109, 952
TseFI GTSAC 4 cut(s) 298, 449, 562, 650
TseI GCWGC 3 cut(s) 221, 408, 963
Tsp45I GTSAC 4 cut(s) 298, 449, 562, 650
TspDTI ATGAA 1 cut(s) 586
TspRI CASTG 2 cut(s) 109, 952
VpaK11BI GGWCC 1 cut(s) 866
VspI ATTAAT 1 cut(s) 803
XapI RAATTY 5 cut(s) 180, 349, 533, 872, 917
XceI RCATGY 2 cut(s) 345, 698
XhoI CTCGAG 1 cut(s) 382
XmiI GTMKAC 2 cut(s) 154, 375
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.