RLG00000028483

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000382
Physical Location & Seq
Reverse (-)
23313132 .. 23315417
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028483

Sequence Viewer

Length: 945 bp
ATGGAAGGAGAGAAAGGTAGAGTATGTGTAACTGGAGGTTCAGGGTTCATAGGGTCCTGGTTGATTCTGAGGCTTCTTGAGCATGGTTACTATGTCAATACCACTGTTAGATCAGACCGAGAACACAAGAAAGATGTAAGCTTCCTCACAGCTCTACCAGGAGCAAAAGAAAAGCTCCAAATTTTCAACGCGGACCTAAGCAACCCGGGAAGTTTCAATGCAGCCATCCAAGGATGCGTCGGAGTGTTCCATGTTGCTACTCCGGTTGACTTTGAAGACAAGGAACCTGAACCAGTAGTGACCAAACGATCAGTCGATGGAGCCCTTGGTATCCTCAAGGCGTGCCTATATGCAAAAACAGTGAAACGTGTTGTGTACACTTCTAGTGTATTTGCTGTTCAATTTAACAACAAAAATGTGGAAGACATGGATGAGAGTTTTTGGAGCTCATACATGATTTCGAAGACATTGACTGAAAGAGCAGTTCTTGAATTTTCGGAGAAAGTTGGATTGGATGTTGTGACAGTAATTCCTTCTTTTGTTGTTGGCCCCTTCATTTGTCCCAAGTTCCCCAGCTCTGTTCGAAGCGCATTGGCTCTGGTTTTAGGTAACAGGGATGAATATCCACTTCTTATCAATTTATCAGTGGTACATGTGGATGATGTCGCCAGAGCGCACATTTTCCTTTTCGAACATCATGATGCAAAAGGGAGATACAATTGCTCATCAGATGTCATAACAATTGAAGAAATGGCCAAGTTCCTTTCTGCTAAAGTCCCTGAATTTCAAATACCCTCAGCAGAGTCATTGAAGGAAGTTAAAGGTCCTAAGATTCCTGGTCTGTCATCAAAGAAACTCTTGGATTCGGGTTTCAAATTTAAGTATGGGGTTGATGACATGTTCGGCGAGGCAATTCGCTGCTGCAAAGAGAAGGGTTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

315

Amino Acids

34.66

Weight (kDa)

6.67

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 259 1.7e-09 NmrA-like family
Epimerase PF01370 8 - 241 2.7e-26 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 227 3.2e-16 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 259 3.9e-16 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 183 1.1e-09 Male sterility protein
NAD_binding_10 PF13460 12 - 178 3.1e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 4 cut(s) 180, 491, 782, 875
AfaI GTAC 2 cut(s) 377, 651
AflIII ACRYGT 3 cut(s) 367, 652, 897
AgsI TTSAA 9 cut(s) 187, 217, 275, 401, 491, 746, 788, 811, 874
AjnI CCWGG 3 cut(s) 56, 157, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 5 cut(s) 141, 152, 175, 447, 576
AluI AGCT 5 cut(s) 141, 152, 175, 447, 576
Alw21I GWGCWC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 547, 753
ApeKI GCWGC 3 cut(s) 221, 918, 921
ApoI RAATTY 4 cut(s) 180, 491, 782, 875
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 2 cut(s) 590, 676
AspS9I GGNCC 4 cut(s) 54, 193, 548, 824
AsuC2I CCSGG 2 cut(s) 206, 207
AsuII TTCGAA 3 cut(s) 461, 583, 690
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 3 cut(s) 54, 193, 824
BalI TGGCCA 1 cut(s) 755
BanII GRGCYC 2 cut(s) 325, 449
BbsI GAAGAC 3 cut(s) 282, 429, 470
Bbv12I GWGCWC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 796
BbvI GCAGC 3 cut(s) 233, 905, 908
BccI CCATC 2 cut(s) 233, 311
BciT130I CCWGG 3 cut(s) 58, 159, 837
BciVI GTATCC 1 cut(s) 341
BcnI CCSGG 2 cut(s) 206, 207
BfaI CTAG 1 cut(s) 384
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 3 cut(s) 222, 919, 922
BlsI GCNGC 3 cut(s) 223, 920, 923
Bme1390I CCNGG 5 cut(s) 58, 159, 206, 207, 837
Bme18I GGWCC 3 cut(s) 54, 193, 824
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 54, 193, 548, 824
BmiI GGNNCC 4 cut(s) 55, 285, 322, 550
BmrFI CCNGG 5 cut(s) 58, 159, 206, 207, 837
BmsI GCATC 2 cut(s) 224, 691
BpiI GAAGAC 3 cut(s) 282, 429, 470
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 2 cut(s) 197, 796
Bpu14I TTCGAA 3 cut(s) 461, 583, 690
BpuEI CTTGAG 2 cut(s) 98, 320
BpuMI CCSGG 2 cut(s) 206, 207
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 205, 229, 325
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 37, 293
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 3 cut(s) 58, 159, 837
BseDI CCNNGG 3 cut(s) 205, 229, 325
BseGI GGATG 6 cut(s) 225, 239, 436, 520, 622, 664
BseJI GATNNNNATC 1 cut(s) 621
BseMII CTCAG 2 cut(s) 59, 810
BseNI ACTGG 2 cut(s) 37, 293
BseXI GCAGC 3 cut(s) 233, 905, 908
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 549, 755
BsiHKAI GWGCWC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 206, 263
BslFI GGGAC 2 cut(s) 546, 761
BsmFI GGGAC 2 cut(s) 546, 761
BsnI GGCC 2 cut(s) 549, 755
BsoBI CYCGRG 1 cut(s) 205
Bsp119I TTCGAA 3 cut(s) 461, 583, 690
Bsp1286I GDGCHC 2 cut(s) 325, 449
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 110, 308
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 549, 755
BspCNI CTCAG 2 cut(s) 60, 809
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 4 cut(s) 55, 285, 322, 550
BspT104I TTCGAA 3 cut(s) 461, 583, 690
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 2 cut(s) 37, 293
BssECI CCNNGG 3 cut(s) 205, 229, 325
BssMI GATC 2 cut(s) 110, 308
BssT1I CCWWGG 2 cut(s) 229, 325
Bst2UI CCWGG 3 cut(s) 58, 159, 837
Bst4CI ACNGT 3 cut(s) 106, 361, 526
BstAUI TGTACA 1 cut(s) 375
BstBI TTCGAA 3 cut(s) 461, 583, 690
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 4 cut(s) 68, 197, 796, 828
BstF5I GGATG 6 cut(s) 225, 239, 436, 520, 622, 664
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 590, 676
BstKTI GATC 2 cut(s) 113, 311
BstMBI GATC 2 cut(s) 110, 308
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 58, 159, 837
BstNSI RCATGY 2 cut(s) 656, 901
BstSCI CCNGG 5 cut(s) 56, 157, 204, 205, 835
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 233, 905, 908
BstV2I GAAGAC 3 cut(s) 282, 429, 470
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 549, 755
BtsCI GGATG 6 cut(s) 225, 239, 436, 520, 622, 664
BtsIMutI CAGTG 3 cut(s) 102, 366, 651
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 697
CfoI GCGC 2 cut(s) 590, 676
Cfr13I GGNCC 4 cut(s) 54, 193, 548, 824
Cfr9I CCCGGG 1 cut(s) 205
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 376, 650
CviAII CATG 7 cut(s) 83, 251, 427, 454, 653, 698, 898
CviQI GTAC 2 cut(s) 376, 650
DdeI CTNAG 4 cut(s) 68, 197, 796, 828
DpnI GATC 2 cut(s) 112, 310
DpnII GATC 2 cut(s) 110, 308
EaeI YGGCCR 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 229, 325
Eco24I GRGCYC 2 cut(s) 325, 449
Eco47I GGWCC 3 cut(s) 54, 193, 824
Eco53kI GAGCTC 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 447
EcoO109I RGGNCCY 2 cut(s) 54, 824
EcoRII CCWGG 3 cut(s) 56, 157, 835
EcoT14I CCWWGG 2 cut(s) 229, 325
EcoT38I GRGCYC 2 cut(s) 325, 449
ErhI CCWWGG 2 cut(s) 229, 325
FaeI CATG 7 cut(s) 86, 254, 430, 457, 656, 701, 901
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 2 cut(s) 546, 761
FatI CATG 7 cut(s) 82, 250, 426, 453, 652, 697, 897
Fnu4HI GCNGC 3 cut(s) 222, 919, 922
FokI GGATG 6 cut(s) 212, 246, 443, 527, 629, 671
FriOI GRGCYC 2 cut(s) 325, 449
Fsp4HI GCNGC 3 cut(s) 222, 919, 922
FspBI CTAG 1 cut(s) 384
GlaI GCGC 2 cut(s) 589, 675
GluI GCNGC 3 cut(s) 222, 919, 922
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 549, 755
HapII CCGG 2 cut(s) 206, 263
HgaI GACGC 1 cut(s) 226
HhaI GCGC 2 cut(s) 590, 676
Hin1II CATG 7 cut(s) 86, 254, 430, 457, 656, 701, 901
Hin6I GCGC 2 cut(s) 588, 674
HinP1I GCGC 2 cut(s) 588, 674
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 4 cut(s) 64, 803, 832, 863
HpaII CCGG 2 cut(s) 206, 263
Hpy166II GTNNAC 3 cut(s) 268, 376, 378
Hpy188I TCNGA 5 cut(s) 69, 115, 242, 499, 730
Hpy188III TCNNGA 3 cut(s) 77, 488, 698
Hpy8I GTNNAC 3 cut(s) 268, 376, 378
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 4 cut(s) 543, 562, 805, 925
HpyCH4III ACNGT 3 cut(s) 106, 361, 526
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 221, 353, 704, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 4 cut(s) 68, 197, 796, 828
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 7 cut(s) 86, 254, 430, 457, 656, 701, 901
HspAI GCGC 2 cut(s) 588, 674
Kzo9I GATC 2 cut(s) 110, 308
LmnI GCTCC 4 cut(s) 161, 180, 320, 444
Lsp1109I GCAGC 3 cut(s) 233, 905, 908
LweI GCATC 2 cut(s) 224, 691
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 5 cut(s) 28, 86, 298, 520, 608
MalI GATC 2 cut(s) 112, 310
MboI GATC 2 cut(s) 110, 308
MboII GAAGA 4 cut(s) 287, 434, 475, 758
MfeI CAATTG 2 cut(s) 718, 741
MhlI GDGCHC 2 cut(s) 325, 449
MlsI TGGCCA 1 cut(s) 755
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 220, 487
MnlI CCTC 6 cut(s) 29, 63, 155, 344, 805, 901
Mox20I TGGCCA 1 cut(s) 755
MscI TGGCCA 1 cut(s) 755
MseI TTAA 3 cut(s) 405, 819, 879
MslI CAYNNNNRTG 2 cut(s) 657, 699
Msp20I TGGCCA 1 cut(s) 755
MspI CCGG 2 cut(s) 206, 263
MspR9I CCNGG 5 cut(s) 58, 159, 206, 207, 837
MunI CAATTG 2 cut(s) 718, 741
MvaI CCWGG 3 cut(s) 58, 159, 837
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 2 cut(s) 206, 207
NdeII GATC 2 cut(s) 110, 308
NlaIII CATG 7 cut(s) 86, 254, 430, 457, 656, 701, 901
NlaIV GGNNCC 4 cut(s) 55, 285, 322, 550
NmuCI GTSAC 2 cut(s) 298, 520
NspI RCATGY 2 cut(s) 656, 901
NspV TTCGAA 3 cut(s) 461, 583, 690
PagI TCATGA 1 cut(s) 697
PciI ACATGT 2 cut(s) 652, 897
PfeI GAWTC 3 cut(s) 64, 832, 863
PkrI GCNGC 3 cut(s) 223, 920, 923
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PpuMI RGGWCCY 2 cut(s) 54, 824
PscI ACATGT 2 cut(s) 652, 897
Psp124BI GAGCTC 1 cut(s) 449
Psp5II RGGWCCY 2 cut(s) 54, 824
Psp6I CCWGG 3 cut(s) 56, 157, 835
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 3 cut(s) 56, 157, 835
PspN4I GGNNCC 4 cut(s) 55, 285, 322, 550
PspPI GGNCC 4 cut(s) 54, 193, 548, 824
PspPPI RGGWCCY 2 cut(s) 54, 824
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
RsaI GTAC 2 cut(s) 377, 651
RsaNI GTAC 2 cut(s) 376, 650
RseI CAYNNNNRTG 2 cut(s) 657, 699
SacI GAGCTC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 405, 819, 879
SatI GCNGC 3 cut(s) 222, 919, 922
Sau3AI GATC 2 cut(s) 110, 308
Sau96I GGNCC 4 cut(s) 54, 193, 548, 824
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 5 cut(s) 58, 159, 206, 207, 837
SduI GDGCHC 2 cut(s) 325, 449
SfaNI GCATC 2 cut(s) 224, 691
SfuI TTCGAA 3 cut(s) 461, 583, 690
SinI GGWCC 3 cut(s) 54, 193, 824
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 657, 699
SmlI CTYRAG 2 cut(s) 77, 335
SmoI CTYRAG 2 cut(s) 77, 335
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 5 cut(s) 56, 157, 204, 205, 835
StyI CCWWGG 2 cut(s) 229, 325
TaaI ACNGT 3 cut(s) 106, 361, 526
TaiI ACGT 1 cut(s) 370
TaqI TCGA 4 cut(s) 315, 461, 583, 690
TaqII GACCGA 1 cut(s) 132
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 3 cut(s) 64, 832, 863
Tru1I TTAA 3 cut(s) 405, 819, 879
Tru9I TTAA 3 cut(s) 405, 819, 879
TscAI CASTG 3 cut(s) 109, 366, 651
TseFI GTSAC 2 cut(s) 298, 520
TseI GCWGC 3 cut(s) 221, 918, 921
Tsp45I GTSAC 2 cut(s) 298, 520
TspDTI ATGAA 3 cut(s) 37, 544, 633
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 3 cut(s) 109, 366, 651
VpaK11BI GGWCC 3 cut(s) 54, 193, 824
XapI RAATTY 4 cut(s) 180, 491, 782, 875
XceI RCATGY 2 cut(s) 656, 901
XmaI CCCGGG 1 cut(s) 205
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.