PAN-like domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B_lectin | PF01453 | 163 - 267 | 1.1e-32 | D-mannose binding lectin |
| S_locus_glycop | PF00954 | 283 - 392 | 7.7e-23 | S-locus glycoprotein domain |
| PAN_2 | PF08276 | 427 - 485 | 4e-16 | PAN-like domain |
| Pkinase | PF00069 | 624 - 823 | 4.9e-44 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 625 - 829 | 6.3e-47 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 345, 1547 |
| Acc16I | TGCGCA | 1 cut(s) | 1404 |
| Acc36I | ACCTGC | 1 cut(s) | 1248 |
| Acc65I | GGTACC | 1 cut(s) | 880 |
| AccB1I | GGYRCC | 2 cut(s) | 619, 880 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 629, 821 |
| AccI | GTMKAC | 1 cut(s) | 142 |
| AccII | CGCG | 1 cut(s) | 481 |
| AccIII | TCCGGA | 1 cut(s) | 770 |
| AciI | CCGC | 4 cut(s) | 400, 479, 657, 1473 |
| AclWI | GGATC | 6 cut(s) | 689, 806, 1805, 2051, 2123, 2703 |
| AcsI | RAATTY | 7 cut(s) | 188, 592, 661, 1083, 1598, 2090, 2289 |
| AcuI | CTGAAG | 6 cut(s) | 357, 406, 510, 984, 1254, 2664 |
| AcvI | CACGTG | 2 cut(s) | 848, 2366 |
| AcyI | GRCGYC | 1 cut(s) | 2436 |
| AfaI | GTAC | 4 cut(s) | 449, 882, 1011, 1167 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 629, 821, 1473, 2227, 2397 |
| AflII | CTTAAG | 1 cut(s) | 1019 |
| AflIII | ACRYGT | 2 cut(s) | 1094, 2363 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2331 |
| AhlI | ACTAGT | 1 cut(s) | 1066 |
| AjnI | CCWGG | 4 cut(s) | 794, 936, 2178, 2265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2093, 2125 |
| Alw21I | GWGCWC | 1 cut(s) | 1698 |
| Alw26I | GTCTC | 4 cut(s) | 394, 2382, 2684, 2749 |
| Alw44I | GTGCAC | 1 cut(s) | 1694 |
| AlwI | GGATC | 6 cut(s) | 689, 806, 1805, 2051, 2123, 2703 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1044 |
| Ama87I | CYCGRG | 2 cut(s) | 1886, 1969 |
| Aor13HI | TCCGGA | 1 cut(s) | 770 |
| AoxI | GGCC | 2 cut(s) | 1349, 1903 |
| ApaLI | GTGCAC | 1 cut(s) | 1694 |
| ApeKI | GCWGC | 7 cut(s) | 521, 638, 748, 1038, 2052, 2055, 2713 |
| ApoI | RAATTY | 7 cut(s) | 188, 592, 661, 1083, 1598, 2090, 2289 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2657, 2689 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1160, 1531 |
| Asp718I | GGTACC | 1 cut(s) | 880 |
| AspLEI | GCGC | 2 cut(s) | 1405, 2139 |
| AspS9I | GGNCC | 3 cut(s) | 1349, 1434, 1904 |
| AsuC2I | CCSGG | 1 cut(s) | 1720 |
| AsuHPI | GGTGA | 3 cut(s) | 4, 197, 1790 |
| AsuII | TTCGAA | 2 cut(s) | 408, 1028 |
| AvaI | CYCGRG | 2 cut(s) | 1886, 1969 |
| AvaII | GGWCC | 1 cut(s) | 1434 |
| BaeGI | GKGCMC | 1 cut(s) | 1698 |
| BanI | GGYRCC | 2 cut(s) | 619, 880 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2098, 2130 |
| BbrPI | CACGTG | 2 cut(s) | 848, 2366 |
| Bbv12I | GWGCWC | 1 cut(s) | 1698 |
| BbvI | GCAGC | 7 cut(s) | 533, 625, 760, 1050, 2039, 2042, 2725 |
| BccI | CCATC | 4 cut(s) | 575, 631, 823, 1294 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2596, 2630 |
| BciT130I | CCWGG | 4 cut(s) | 796, 938, 2180, 2267 |
| BciVI | GTATCC | 1 cut(s) | 2107 |
| BclI | TGATCA | 1 cut(s) | 1768 |
| BcnI | CCSGG | 1 cut(s) | 1720 |
| BcoDI | GTCTC | 4 cut(s) | 394, 2382, 2684, 2749 |
| BcuI | ACTAGT | 1 cut(s) | 1066 |
| BfaI | CTAG | 8 cut(s) | 219, 723, 1067, 1496, 1710, 2190, 2336, 2558 |
| BfmI | CTRYAG | 3 cut(s) | 639, 1537, 2425 |
| BfrI | CTTAAG | 1 cut(s) | 1019 |
| BfuAI | ACCTGC | 1 cut(s) | 1248 |
| BfuI | GTATCC | 1 cut(s) | 2107 |
| BisI | GCNGC | 8 cut(s) | 400, 522, 639, 749, 1039, 2053, 2056, 2714 |
| BlpI | GCTNAGC | 1 cut(s) | 1052 |
| BlsI | GCNGC | 8 cut(s) | 401, 523, 640, 750, 1040, 2054, 2057, 2715 |
| BmcAI | AGTACT | 1 cut(s) | 1011 |
| Bme1390I | CCNGG | 5 cut(s) | 796, 938, 1720, 2180, 2267 |
| Bme18I | GGWCC | 1 cut(s) | 1434 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2331 |
| BmeT110I | CYCGRG | 2 cut(s) | 1886, 1969 |
| BmgT120I | GGNCC | 3 cut(s) | 1349, 1434, 1904 |
| BmiI | GGNNCC | 4 cut(s) | 280, 621, 882, 1350 |
| BmrFI | CCNGG | 5 cut(s) | 796, 938, 1720, 2180, 2267 |
| BmrI | ACTGGG | 1 cut(s) | 1355 |
| BmsI | GCATC | 6 cut(s) | 1002, 1361, 1992, 2260, 2594, 2782 |
| BmuI | ACTGGG | 1 cut(s) | 1355 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1451, 1483 |
| BpmI | CTGGAG | 3 cut(s) | 590, 1227, 2364 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2133, 2709 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1052 |
| Bpu14I | TTCGAA | 2 cut(s) | 408, 1028 |
| BpuEI | CTTGAG | 1 cut(s) | 1693 |
| BpuMI | CCSGG | 1 cut(s) | 1720 |
| BsaAI | YACGTR | 3 cut(s) | 451, 848, 2366 |
| BsaHI | GRCGYC | 1 cut(s) | 2436 |
| BsaJI | CCNNGG | 3 cut(s) | 937, 2179, 2391 |
| BsaWI | WCCGGW | 2 cut(s) | 770, 883 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1200, 1230 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 629, 821, 1473, 2227, 2397 |
| Bse1I | ACTGG | 8 cut(s) | 1049, 1205, 1210, 1350, 1437, 1625, 1962, 2553 |
| Bse3DI | GCAATG | 2 cut(s) | 142, 1584 |
| BseAI | TCCGGA | 1 cut(s) | 770 |
| BseBI | CCWGG | 4 cut(s) | 796, 938, 2180, 2267 |
| BseDI | CCNNGG | 3 cut(s) | 937, 2179, 2391 |
| BseGI | GGATG | 1 cut(s) | 2275 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 629, 821, 1473, 2227, 2397 |
| BseMI | GCAATG | 2 cut(s) | 142, 1584 |
| BseMII | CTCAG | 1 cut(s) | 1004 |
| BseNI | ACTGG | 8 cut(s) | 1049, 1205, 1210, 1350, 1437, 1625, 1962, 2553 |
| BseRI | GAGGAG | 1 cut(s) | 2000 |
| BseSI | GKGCMC | 1 cut(s) | 1698 |
| BseXI | GCAGC | 7 cut(s) | 533, 625, 760, 1050, 2039, 2042, 2725 |
| BseYI | CCCAGC | 3 cut(s) | 395, 751, 1056 |
| BsgI | GTGCAG | 1 cut(s) | 2651 |
| Bsh1236I | CGCG | 1 cut(s) | 481 |
| BshFI | GGCC | 2 cut(s) | 1351, 1905 |
| BshNI | GGYRCC | 2 cut(s) | 619, 880 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1698 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1886, 1969 |
| BsiSI | CCGG | 4 cut(s) | 771, 884, 1719, 2663 |
| BslFI | GGGAC | 1 cut(s) | 2559 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 629, 821, 1473, 2227, 2397 |
| BsmAI | GTCTC | 4 cut(s) | 394, 2382, 2684, 2749 |
| BsmBI | CGTCTC | 1 cut(s) | 2684 |
| BsmFI | GGGAC | 1 cut(s) | 2559 |
| BsnI | GGCC | 2 cut(s) | 1351, 1905 |
| BsoBI | CYCGRG | 2 cut(s) | 1886, 1969 |
| Bsp119I | TTCGAA | 2 cut(s) | 408, 1028 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1698 |
| Bsp13I | TCCGGA | 1 cut(s) | 770 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1052 |
| Bsp19I | CCATGG | 1 cut(s) | 2391 |
| BspACI | CCGC | 4 cut(s) | 400, 479, 657, 1473 |
| BspANI | GGCC | 2 cut(s) | 1351, 1905 |
| BspCNI | CTCAG | 1 cut(s) | 1005 |
| BspEI | TCCGGA | 1 cut(s) | 770 |
| BspFNI | CGCG | 1 cut(s) | 481 |
| BspLI | GGNNCC | 4 cut(s) | 280, 621, 882, 1350 |
| BspMAI | CTGCAG | 2 cut(s) | 643, 1541 |
| BspMI | ACCTGC | 1 cut(s) | 1248 |
| BspPI | GGATC | 6 cut(s) | 689, 806, 1805, 2051, 2123, 2703 |
| BspQI | GCTCTTC | 1 cut(s) | 2139 |
| BspT104I | TTCGAA | 2 cut(s) | 408, 1028 |
| BspT107I | GGYRCC | 2 cut(s) | 619, 880 |
| BspTI | CTTAAG | 1 cut(s) | 1019 |
| BsrDI | GCAATG | 2 cut(s) | 142, 1584 |
| BsrI | ACTGG | 8 cut(s) | 1049, 1205, 1210, 1350, 1437, 1625, 1962, 2553 |
| BssECI | CCNNGG | 3 cut(s) | 937, 2179, 2391 |
| BssNI | GRCGYC | 1 cut(s) | 2436 |
| BssT1I | CCWWGG | 1 cut(s) | 2391 |
| Bst2UI | CCWGG | 4 cut(s) | 796, 938, 2180, 2267 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 357, 2803 |
| Bst6I | CTCTTC | 4 cut(s) | 207, 1003, 2124, 2139 |
| BstACI | GRCGYC | 1 cut(s) | 2436 |
| BstAFI | CTTAAG | 1 cut(s) | 1019 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1702 |
| BstBAI | YACGTR | 3 cut(s) | 451, 848, 2366 |
| BstBI | TTCGAA | 2 cut(s) | 408, 1028 |
| BstC8I | GCNNGC | 6 cut(s) | 311, 823, 1642, 1694, 2609, 2630 |
| BstDEI | CTNAG | 8 cut(s) | 905, 1013, 1052, 2133, 2509, 2590, 2681, 2709 |
| BstDSI | CCRYGG | 1 cut(s) | 2391 |
| BstF5I | GGATG | 1 cut(s) | 2275 |
| BstFNI | CGCG | 1 cut(s) | 481 |
| BstHHI | GCGC | 2 cut(s) | 1405, 2139 |
| BstMAI | GTCTC | 4 cut(s) | 394, 2382, 2684, 2749 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1505, 1630, 1702, 2484 |
| BstNI | CCWGG | 4 cut(s) | 796, 938, 2180, 2267 |
| BstNSI | RCATGY | 2 cut(s) | 1098, 2611 |
| BstSCI | CCNGG | 5 cut(s) | 794, 936, 1718, 2178, 2265 |
| BstSFI | CTRYAG | 3 cut(s) | 639, 1537, 2425 |
| BstSLI | GKGCMC | 1 cut(s) | 1698 |
| BstUI | CGCG | 1 cut(s) | 481 |
| BstV1I | GCAGC | 7 cut(s) | 533, 625, 760, 1050, 2039, 2042, 2725 |
| BstX2I | RGATCY | 1 cut(s) | 2695 |
| BstYI | RGATCY | 1 cut(s) | 2695 |
| BsuI | GTATCC | 1 cut(s) | 2107 |
| BsuRI | GGCC | 2 cut(s) | 1351, 1905 |
| BtgI | CCRYGG | 1 cut(s) | 2391 |
| BtsCI | GGATG | 1 cut(s) | 2275 |
| BtsI | GCAGTG | 1 cut(s) | 1647 |
| BtsIMutI | CAGTG | 2 cut(s) | 1444, 1647 |
| BveI | ACCTGC | 1 cut(s) | 1248 |
| Cac8I | GCNNGC | 6 cut(s) | 311, 823, 1642, 1694, 2609, 2630 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1044 |
| CfoI | GCGC | 2 cut(s) | 1405, 2139 |
| Cfr13I | GGNCC | 3 cut(s) | 1349, 1434, 1904 |
| CseI | GACGC | 3 cut(s) | 1633, 2047, 2425 |
| Csp6I | GTAC | 4 cut(s) | 448, 881, 1010, 1166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 31, 66 |
| CviQI | GTAC | 4 cut(s) | 448, 881, 1010, 1166 |
| DdeI | CTNAG | 8 cut(s) | 905, 1013, 1052, 2133, 2509, 2590, 2681, 2709 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2331 |
| Eam1104I | CTCTTC | 4 cut(s) | 207, 1003, 2124, 2139 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2331 |
| EarI | CTCTTC | 4 cut(s) | 207, 1003, 2124, 2139 |
| Eco130I | CCWWGG | 1 cut(s) | 2391 |
| Eco47I | GGWCC | 1 cut(s) | 1434 |
| Eco57I | CTGAAG | 6 cut(s) | 357, 406, 510, 984, 1254, 2664 |
| Eco72I | CACGTG | 2 cut(s) | 848, 2366 |
| Eco88I | CYCGRG | 2 cut(s) | 1886, 1969 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1349 |
| EcoRI | GAATTC | 2 cut(s) | 592, 2090 |
| EcoRII | CCWGG | 4 cut(s) | 794, 936, 2178, 2265 |
| EcoT14I | CCWWGG | 1 cut(s) | 2391 |
| EcoT22I | ATGCAT | 1 cut(s) | 2609 |
| ErhI | CCWWGG | 1 cut(s) | 2391 |
| Esp3I | CGTCTC | 1 cut(s) | 2684 |
| FaqI | GGGAC | 1 cut(s) | 2559 |
| FauI | CCCGC | 1 cut(s) | 1466 |
| FbaI | TGATCA | 1 cut(s) | 1768 |
| FblI | GTMKAC | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 8 cut(s) | 400, 522, 639, 749, 1039, 2053, 2056, 2714 |
| FokI | GGATG | 1 cut(s) | 2282 |
| Fsp4HI | GCNGC | 8 cut(s) | 400, 522, 639, 749, 1039, 2053, 2056, 2714 |
| FspBI | CTAG | 8 cut(s) | 219, 723, 1067, 1496, 1710, 2190, 2336, 2558 |
| FspI | TGCGCA | 1 cut(s) | 1404 |
| GlaI | GCGC | 2 cut(s) | 1404, 2138 |
| GluI | GCNGC | 8 cut(s) | 400, 522, 639, 749, 1039, 2053, 2056, 2714 |
| GsaI | CCCAGC | 3 cut(s) | 399, 755, 1060 |
| GsuI | CTGGAG | 3 cut(s) | 590, 1227, 2364 |
| HaeIII | GGCC | 2 cut(s) | 1351, 1905 |
| HapII | CCGG | 4 cut(s) | 771, 884, 1719, 2663 |
| HgaI | GACGC | 3 cut(s) | 1633, 2047, 2425 |
| HhaI | GCGC | 2 cut(s) | 1405, 2139 |
| Hin1I | GRCGYC | 1 cut(s) | 2436 |
| Hin6I | GCGC | 2 cut(s) | 1403, 2137 |
| HinP1I | GCGC | 2 cut(s) | 1403, 2137 |
| HincII | GTYRAC | 2 cut(s) | 442, 606 |
| HindII | GTYRAC | 2 cut(s) | 442, 606 |
| HindIII | AAGCTT | 2 cut(s) | 1022, 2107 |
| HpaI | GTTAAC | 1 cut(s) | 442 |
| HpaII | CCGG | 4 cut(s) | 771, 884, 1719, 2663 |
| HphI | GGTGA | 3 cut(s) | 4, 197, 1790 |
| Hpy166II | GTNNAC | 9 cut(s) | 53, 143, 442, 606, 934, 1241, 1517, 1696, 1912 |
| Hpy8I | GTNNAC | 9 cut(s) | 53, 143, 442, 606, 934, 1241, 1517, 1696, 1912 |
| Hpy99I | CGWCG | 1 cut(s) | 1819 |
| HpyAV | CCTTC | 7 cut(s) | 1610, 1886, 1925, 2221, 2242, 2531, 2804 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 357, 2803 |
| HpyCH4IV | ACGT | 6 cut(s) | 58, 226, 450, 847, 2365, 2667 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1505, 1630, 1702, 2484 |
| HpyF3I | CTNAG | 8 cut(s) | 905, 1013, 1052, 2133, 2509, 2590, 2681, 2709 |
| HpySE526I | ACGT | 6 cut(s) | 58, 226, 450, 847, 2365, 2667 |
| Hsp92I | GRCGYC | 1 cut(s) | 2436 |
| HspAI | GCGC | 2 cut(s) | 1403, 2137 |
| Kpn2I | TCCGGA | 1 cut(s) | 770 |
| KpnI | GGTACC | 1 cut(s) | 884 |
| Ksp22I | TGATCA | 1 cut(s) | 1768 |
| KspAI | GTTAAC | 1 cut(s) | 442 |
| LguI | GCTCTTC | 1 cut(s) | 2139 |
| LmnI | GCTCC | 5 cut(s) | 571, 689, 1188, 1505, 1819 |
| Lsp1109I | GCAGC | 7 cut(s) | 533, 625, 760, 1050, 2039, 2042, 2725 |
| LweI | GCATC | 6 cut(s) | 1002, 1361, 1992, 2260, 2594, 2782 |
| MaeI | CTAG | 8 cut(s) | 219, 723, 1067, 1496, 1710, 2190, 2336, 2558 |
| MaeII | ACGT | 6 cut(s) | 58, 226, 450, 847, 2365, 2667 |
| MflI | RGATCY | 1 cut(s) | 2695 |
| MhlI | GDGCHC | 1 cut(s) | 1698 |
| MlyI | GAGTC | 3 cut(s) | 1024, 2341, 2613 |
| MmeI | TCCRAC | 3 cut(s) | 817, 1797, 2047 |
| Mph1103I | ATGCAT | 1 cut(s) | 2609 |
| MroI | TCCGGA | 1 cut(s) | 770 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1160, 1531 |
| MseI | TTAA | 7 cut(s) | 441, 1020, 1104, 1310, 1410, 1745, 1850 |
| MslI | CAYNNNNRTG | 4 cut(s) | 330, 1764, 1776, 2801 |
| MspA1I | CMGCKG | 4 cut(s) | 638, 657, 751, 821 |
| MspCI | CTTAAG | 1 cut(s) | 1019 |
| MspI | CCGG | 4 cut(s) | 771, 884, 1719, 2663 |
| MspR9I | CCNGG | 5 cut(s) | 796, 938, 1720, 2180, 2267 |
| MvaI | CCWGG | 4 cut(s) | 796, 938, 2180, 2267 |
| MvnI | CGCG | 1 cut(s) | 481 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1505, 1630, 1702, 2484 |
| NciI | CCSGG | 1 cut(s) | 1720 |
| NcoI | CCATGG | 1 cut(s) | 2391 |
| NlaIV | GGNNCC | 4 cut(s) | 280, 621, 882, 1350 |
| NmuCI | GTSAC | 7 cut(s) | 10, 318, 357, 725, 1439, 1645, 1778 |
| NsbI | TGCGCA | 1 cut(s) | 1404 |
| NsiI | ATGCAT | 1 cut(s) | 2609 |
| NspI | RCATGY | 2 cut(s) | 1098, 2611 |
| NspV | TTCGAA | 2 cut(s) | 408, 1028 |
| PaeI | GCATGC | 1 cut(s) | 2611 |
| PciI | ACATGT | 1 cut(s) | 1094 |
| PciSI | GCTCTTC | 1 cut(s) | 2139 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1160, 1531 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 629, 821 |
| PfoI | TCCNGGA | 1 cut(s) | 2265 |
| PkrI | GCNGC | 8 cut(s) | 401, 523, 640, 750, 1040, 2054, 2057, 2715 |
| PleI | GAGTC | 3 cut(s) | 1023, 2340, 2613 |
| PmaCI | CACGTG | 2 cut(s) | 848, 2366 |
| PmlI | CACGTG | 2 cut(s) | 848, 2366 |
| PpsI | GAGTC | 3 cut(s) | 1023, 2340, 2613 |
| Ppu21I | YACGTR | 3 cut(s) | 451, 848, 2366 |
| PscI | ACATGT | 1 cut(s) | 1094 |
| PsiI | TTATAA | 2 cut(s) | 345, 1547 |
| Psp6I | CCWGG | 4 cut(s) | 794, 936, 2178, 2265 |
| PspCI | CACGTG | 2 cut(s) | 848, 2366 |
| PspFI | CCCAGC | 3 cut(s) | 395, 751, 1056 |
| PspGI | CCWGG | 4 cut(s) | 794, 936, 2178, 2265 |
| PspN4I | GGNNCC | 4 cut(s) | 280, 621, 882, 1350 |
| PspPI | GGNCC | 3 cut(s) | 1349, 1434, 1904 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 262, 294 |
| PstI | CTGCAG | 2 cut(s) | 643, 1541 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1044 |
| PsuI | RGATCY | 1 cut(s) | 2695 |
| PvuII | CAGCTG | 3 cut(s) | 638, 751, 821 |
| RsaI | GTAC | 4 cut(s) | 449, 882, 1011, 1167 |
| RsaNI | GTAC | 4 cut(s) | 448, 881, 1010, 1166 |
| RseI | CAYNNNNRTG | 4 cut(s) | 330, 1764, 1776, 2801 |
| SapI | GCTCTTC | 1 cut(s) | 2139 |
| SaqAI | TTAA | 7 cut(s) | 441, 1020, 1104, 1310, 1410, 1745, 1850 |
| SatI | GCNGC | 8 cut(s) | 400, 522, 639, 749, 1039, 2053, 2056, 2714 |
| Sau96I | GGNCC | 3 cut(s) | 1349, 1434, 1904 |
| ScaI | AGTACT | 1 cut(s) | 1011 |
| SchI | GAGTC | 3 cut(s) | 1024, 2341, 2613 |
| ScrFI | CCNGG | 5 cut(s) | 796, 938, 1720, 2180, 2267 |
| SduI | GDGCHC | 1 cut(s) | 1698 |
| SfaNI | GCATC | 6 cut(s) | 1002, 1361, 1992, 2260, 2594, 2782 |
| SfcI | CTRYAG | 3 cut(s) | 639, 1537, 2425 |
| SfuI | TTCGAA | 2 cut(s) | 408, 1028 |
| SinI | GGWCC | 1 cut(s) | 1434 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 330, 1764, 1776, 2801 |
| SmlI | CTYRAG | 2 cut(s) | 1019, 1672 |
| SmoI | CTYRAG | 2 cut(s) | 1019, 1672 |
| SpeI | ACTAGT | 1 cut(s) | 1066 |
| SphI | GCATGC | 1 cut(s) | 2611 |
| SsiI | CCGC | 4 cut(s) | 400, 479, 657, 1473 |
| SspI | AATATT | 4 cut(s) | 613, 950, 2173, 2773 |
| SspMI | CTAG | 8 cut(s) | 219, 723, 1067, 1496, 1710, 2190, 2336, 2558 |
| StyD4I | CCNGG | 5 cut(s) | 794, 936, 1718, 2178, 2265 |
| StyI | CCWWGG | 1 cut(s) | 2391 |
| TaaI | ACNGT | 3 cut(s) | 94, 357, 2803 |
| TaiI | ACGT | 6 cut(s) | 61, 229, 453, 850, 2368, 2670 |
| TaqI | TCGA | 5 cut(s) | 408, 759, 1028, 1338, 2808 |
| TatI | WGTACW | 1 cut(s) | 1009 |
| TauI | GCSGC | 1 cut(s) | 402 |
| Tru1I | TTAA | 7 cut(s) | 441, 1020, 1104, 1310, 1410, 1745, 1850 |
| Tru9I | TTAA | 7 cut(s) | 441, 1020, 1104, 1310, 1410, 1745, 1850 |
| TscAI | CASTG | 2 cut(s) | 1444, 1654 |
| TseFI | GTSAC | 7 cut(s) | 10, 318, 357, 725, 1439, 1645, 1778 |
| TseI | GCWGC | 7 cut(s) | 521, 638, 748, 1038, 2052, 2055, 2713 |
| Tsp45I | GTSAC | 7 cut(s) | 10, 318, 357, 725, 1439, 1645, 1778 |
| TspGWI | ACGGA | 5 cut(s) | 1020, 1518, 1803, 2517, 2708 |
| TspRI | CASTG | 2 cut(s) | 1444, 1654 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 629, 821 |
| Vha464I | CTTAAG | 1 cut(s) | 1019 |
| VneI | GTGCAC | 1 cut(s) | 1694 |
| VpaK11BI | GGWCC | 1 cut(s) | 1434 |
| XapI | RAATTY | 7 cut(s) | 188, 592, 661, 1083, 1598, 2090, 2289 |
| XbaI | TCTAGA | 2 cut(s) | 218, 1709 |
| XceI | RCATGY | 2 cut(s) | 1098, 2611 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 822 |
| XmiI | GTMKAC | 1 cut(s) | 142 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1160, 1531 |
| XspI | CTAG | 8 cut(s) | 219, 723, 1067, 1496, 1710, 2190, 2336, 2558 |
| ZrmI | AGTACT | 1 cut(s) | 1011 |
| Zsp2I | ATGCAT | 1 cut(s) | 2609 |