MD05G1331400.v1.1

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000033
Physical Location & Seq
Forward (+)
45538638 .. 45542118
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1331400.v1.1.491

Sequence Viewer

Length: 2493 bp
ATGAATTCCTCCATGTTCTTCCTATTGTTCTTAAGCTTGCTTTTGACACAGCATTATTGTGCTGAGGTATATAACATAACTTCTTTGCAACCATTAGCGCAGGGACAAACTCTTTTCTCCCCCAGCCACATTTTCGAATTGGGTTTCTTCAGCCCCAACAATTCCGAAAATAAGTATGTGGGAATATGGCACAAGAATATGTTTCCTCGCAAAGTTGTGTGGGTTGCCAACAGAGAAAAGCCGCTTGCAGTTGCAGACGCCTTGGCTAGTTTAGCGATTAACAATGGGAAACTTGAGCTTGTAGATGGGAAACAGAAATCTATATGGTCAATCAATATTCCGGAGTCATCGTATAGCTCAGCTGCAGTTCTTTTAGACACTGGAAACCTCGTTGTTGCGGATGATAGAGGAGCTCAATTATGGAAGAGCTTTGATTATCCTGGTGACACATTTCTTCCTGGAATGTTGATGGGATTTGATAGTCAATCTGGAAAGCAGAATGTCTTGACTGCCTGGAAAAATTTGAACGATTCATCAAGAGGGTTATTCTTGGTTGAATTGGCACCACAGATCCCAGCTCAGATATTCGTTCGGATTAACGGATCAACTCCCTGCTGGAGAAGCGGTCCATGGGATAAATCAAAGTTCATAGGCATACCCGAAATGGATGATCAATATCTTAGTGGTCATATGGTGCTTGATTATGAGCAACAGGGAGCAGCGTCCTTTTTCTGCAGTAGTGCATATAACAAAAGTTTGGTATATATGGATATCTCTTCAAACGGTAGACTGAAGACTATGGTATCGGAACATGGTGAGAACTGGCGTATTAACTGGGAGGCCCAAAGGACTCCATGCGACTATTATGGAACATGTGGACCTTTTGGGGTTTGCAAAGTTACTGATTCTCTAACAACTCCAATCTGCAAGTGTTTGAAAGGGTTCGTACCCAAGTCACTTGAGGAATGGAGTAAGGGAAACACGACAGGAGGGTGCGTGAGGAAAGCCAAATTGTTTTGTGAGAGTAACACAAGTCAGCCAGTTGCTTCAGGAGGAAAAGAAGACGGGTTTCTAAAAATAGAAAGCGTAAACCCACCAGATTTTCATGAGTATATTTTGAATATGGATTTTCAAGGCTGCAGGACTCAGTGCCAAAATAATTGTTCTTGCCTGGCTTATGCATTTGTTACCAATATAGGTTGTTTAATCTGGTCCCAGGACCTTTTAGATATTCAGCAGTTTTCCACTGGCGGAGTGGATCTCTTTATTCGCCTAGCTGATGCCGAATTTGGCGAAGGAAAGCGAACAAAGTTAATTGTCAGCCTTACATCTATATGTTTTATCAGTATTGCTGCAGTAGTGTTCGGTTTGCACAGGTTACGCGCTAAACAAAAGGGAAACATCAAAGTAACAACAATGCGCAGTGAATTGAATGACATGACTAAGAATTCAAGGGACACTATCGAAGAACTTATAAGAAAACATGATCCATCAGAGCTTATAATCTATGATCTTGATAGCATATTAATTGCTACGAGCAATTTCAGCATCAACAACAAACTTGGGGGAGGAGGATTTGGCCCCGTTTACAAGGGAAAGCTACAAGAAGGGAAGGAAATAGCAGTAAAAAGACTGTCTAGTAGCTCGGGGCAAGGCATAGAAGAGTTCAAGAATGAAGTGATGTTGATCTCTAAACTCCAACATAAAAATCTTGTTAGGATCATGGGTTGCTGCATTAAAGATGACGAGAAGTTATTGATCTATGAGTTCATGCCAAACAGAAGCTTGGATACTCTTCTATTCGATCCAATGAGAAGAGGAGTGCTTGATTGGGCTAAACGCTTCAATATTATTCAAGGTGTCGCTAGAGGACTTCTTTATCTCCATCATGATTCCTGTTTGAAGGTAATACATAGAGATTTGAAGGTCAGTAATATTCTCTTGGATGAGAATATGAACCCGAAAATTTCAGATTTTGGACTGGCACGCATTGTTCAAGGGACGCATAATTTAGAAAACACTCAGAAGGTGGTGGGAACTCTTGGCTATATGTCTCCGGAGTATGCCATGAGAGGGATATTTTCTGAAAAATCCGATGTCTATAGCTTTGGGGTCTTGCTATTGGAGATTATTGCCGGCAGAAAGAATACCAGCTCCTTTTACAAGGAACAAGAGCTAGGTATCCTAGCTTATGCATGGAACTTATGGAATGAAGGCAAGGGATTGGACTTTGTAGATGAAGTATTGGCAGATTCATATTCGGCATCAGAAGTGATGAGATGCATGCATATCGGGCTTCTTTGCGTGCAAAACAATGCTGCAGATAGGCCAACAATTGCAGATGTGGTTTTCATGCTAAGGAGCGAGACAGATTGTGCGCAGCCTAAGCAGCCTACATTCACCTTCCAAAACTCTCTATCTGATCTTCAACCACACCATAACCATGTTTGGTCTGCAAATGAAGCCACCATATCACTTCTCGAAGGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

831

Amino Acids

92.85

Weight (kDa)

6.31

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 173 1.7e-28 D-mannose binding lectin
S_locus_glycop PF00954 206 - 319 2e-26 S-locus glycoprotein domain
PAN_2 PF08276 353 - 411 2.5e-16 PAN-like domain
PK_Tyr_Ser-Thr PF07714 516 - 782 1.7e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 516 - 718 1.7e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G61370 AT1G61370 AT1G61380 AT1G61390 AT1G61390 AT1G61400 AT1G61400 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61440 AT1G61440 AT1G61440 AT1G61460 AT1G61475 AT1G61480 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61500 AT1G61500 AT1G61500 AT1G61550
fragaria_vesca FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_2g05942 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03432 FvH4_3g03433 FvH4_3g03434 FvH4_3g03450 FvH4_3g03451 FvH4_3g03460 FvH4_3g03461 FvH4_3g03481 FvH4_3g03482 FvH4_3g03501 FvH4_3g03502 FvH4_3g03520 FvH4_3g03521 FvH4_3g03560 FvH4_3g03560 FvH4_3g03581 FvH4_3g03581 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g32570
malus_domestica MD05G1329700.v1.1 MD05G1329900.v1.1 MD05G1330000.v1.1 MD05G1330100.v1.1 MD05G1330200.v1.1 MD05G1330400.v1.1 MD05G1330600.v1.1 MD05G1330700.v1.1 MD05G1330800.v1.1 MD05G1331000.v1.1 MD05G1331100.v1.1 MD05G1331200.v1.1 MD05G1331300.v1.1 MD05G1331400.v1.1 MD05G1331500.v1.1 MD05G1331600.v1.1 MD05G1331700.v1.1 MD10G1306700.v1.1 MD10G1306800.v1.1 MD10G1306900.v1.1 MD10G1307300.v1.1 MD10G1307500.v1.1 MD17G1248100.v1.1 MD17G1249300.v1.1 MD17G1249500.v1.1 MD17G1249800.v1.1
prunus_persica Prupe.4G032500_v2.0.a1 Prupe.4G032600_v2.0.a1 Prupe.4G032700_v2.0.a1 Prupe.4G032900_v2.0.a1 Prupe.4G033000_v2.0.a1
pyrus_communis pycom05g30280 pycom05g30290 pycom05g30300 pycom05g30310 pycom05g30330 pycom05g30360 pycom05g30380 pycom10g25890 pycom10g25910 pycom17g24930 pycom17g24940 pycom17g25000 pycom17g25060 pycom17g25350
rosa_chinensis RchiOBHm_Chr1g0319071 RchiOBHm_Chr1g0319131 RchiOBHm_Chr1g0319141 RchiOBHm_Chr1g0319161 RchiOBHm_Chr1g0319181 RchiOBHm_Chr1g0319221 RchiOBHm_Chr1g0319231 RchiOBHm_Chr1g0319241 RchiOBHm_Chr1g0319311 RchiOBHm_Chr1g0334421 RchiOBHm_Chr1g0337491 RchiOBHm_Chr1g0337661 RchiOBHm_Chr1g0337691 RchiOBHm_Chr1g0337791 RchiOBHm_Chr1g0352251 RchiOBHm_Chr2g0122431 RchiOBHm_Chr2g0160101 RchiOBHm_Chr3g0485161 RchiOBHm_Chr3g0485171 RchiOBHm_Chr4g0389441 RchiOBHm_Chr4g0389451 RchiOBHm_Chr4g0392601 RchiOBHm_Chr4g0393961 RchiOBHm_Chr4g0393991 RchiOBHm_Chr4g0394071 RchiOBHm_Chr4g0394091 RchiOBHm_Chr4g0394151 RchiOBHm_Chr4g0408281 RchiOBHm_Chr4g0408311 RchiOBHm_Chr4g0416941 RchiOBHm_Chr5g0005231 RchiOBHm_Chr5g0005241 RchiOBHm_Chr5g0005261 RchiOBHm_Chr5g0005291 RchiOBHm_Chr5g0005301 RchiOBHm_Chr5g0005311 RchiOBHm_Chr5g0005321 RchiOBHm_Chr5g0005331 RchiOBHm_Chr5g0005341 RchiOBHm_Chr5g0005351 RchiOBHm_Chr5g0005361 RchiOBHm_Chr5g0005371 RchiOBHm_Chr5g0005381 RchiOBHm_Chr5g0005391 RchiOBHm_Chr5g0005411 RchiOBHm_Chr5g0005421 RchiOBHm_Chr5g0005441 RchiOBHm_Chr5g0005451 RchiOBHm_Chr5g0005471 RchiOBHm_Chr5g0005521 RchiOBHm_Chr5g0005531 RchiOBHm_Chr5g0005541 RchiOBHm_Chr5g0005551 RchiOBHm_Chr5g0005571 RchiOBHm_Chr5g0005581 RchiOBHm_Chr5g0005631 RchiOBHm_Chr7g0211391 RchiOBHm_Chr7g0222041 RchiOBHm_Chr7g0222051 RchiOBHm_Chr7g0222061 RchiOBHm_Chr7g0222071 RchiOBHm_Chr7g0231441
rosa_laevigata RLG00000007941 RLG00000007942 RLG00000007943 RLG00000008271 RLG00000008656 RLG00000009719 RLG00000009722 RLG00000009981 RLG00000014698 RLG00000018673 RLG00000018675 RLG00000021197 RLG00000022560 RLG00000022561 RLG00000022562 RLG00000022563 RLG00000029269 RLG00000029456 RLG00000030495 RLG00000030497 RLG00000030499 RLG00000030501 RLG00000030505 RLG00000031302 RLG00000031304 RLG00000031305 RLG00000031306 RLG00000031308 RLG00000031309 RLG00000031310 RLG00000031313 RLG00000031343 RLG00000031344 RLG00000031386
rosa_multiflora Rmu_co8145070.1_g000001 Rmu_co8220846.1_g000001 Rmu_co8338791.1_g000001 Rmu_co8346441.1_g000001 Rmu_co8405641.1_g000001 Rmu_co8485383.1_g000001 Rmu_co8515907.1_g000001 Rmu_sc0000570.1_g000001 Rmu_sc0000570.1_g000008 Rmu_sc0000570.1_g000019 Rmu_sc0000570.1_g000020 Rmu_sc0000570.1_g000021 Rmu_sc0000942.1_g000001 Rmu_sc0000942.1_g000029 Rmu_sc0001199.1_g000004 Rmu_sc0001199.1_g000005 Rmu_sc0001199.1_g000006 Rmu_sc0001199.1_g000007 Rmu_sc0001199.1_g000008 Rmu_sc0001199.1_g000009 Rmu_sc0001543.1_g000005 Rmu_sc0002023.1_g000008 Rmu_sc0002498.1_g000016 Rmu_sc0002539.1_g000034 Rmu_sc0002772.1_g000013 Rmu_sc0002786.1_g000018 Rmu_sc0003301.1_g000009 Rmu_sc0003338.1_g000007 Rmu_sc0003338.1_g000011 Rmu_sc0003428.1_g000003 Rmu_sc0003574.1_g000001 Rmu_sc0003574.1_g000008 Rmu_sc0003832.1_g000025 Rmu_sc0004149.1_g000004 Rmu_sc0004553.1_g000006 Rmu_sc0004950.1_g000008 Rmu_sc0005072.1_g000017 Rmu_sc0006085.1_g000002 Rmu_sc0006981.1_g000007 Rmu_sc0009469.1_g000003 Rmu_sc0010358.1_g000001 Rmu_sc0014528.1_g000003 Rmu_sc0014528.1_g000005 Rmu_sc0014528.1_g000006 Rmu_sc0018903.1_g000009 Rmu_sc0021494.1_g000001 Rmu_sc0022096.1_g000001 Rmu_sc0025170.1_g000001 Rmu_sc0025170.1_g000002 Rmu_sc0025170.1_g000003 Rmu_sc0025818.1_g000001 Rmu_sc0026277.1_g000001 Rmu_sc0034649.1_g000001 Rmu_sc0036724.1_g000001 Rmu_sc0039163.1_g000001
rosa_roxburghii Rroxscaffold_1G00070200 Rroxscaffold_1G00070210 Rroxscaffold_1G00070260 Rroxscaffold_1G00070270 Rroxscaffold_1G00070280 Rroxscaffold_1G00070290 Rroxscaffold_1G00070300 Rroxscaffold_1G00070320 Rroxscaffold_1G00070340 Rroxscaffold_1G00070350 Rroxscaffold_1G00070360 Rroxscaffold_1G00070370 Rroxscaffold_1G00070380 Rroxscaffold_1G00070390 Rroxscaffold_1G00070410 Rroxscaffold_1G00070420 Rroxscaffold_1G00070440 Rroxscaffold_2G00090040 Rroxscaffold_2G00121670 Rroxscaffold_2G00121720 Rroxscaffold_3G00229310 Rroxscaffold_4G00314020 Rroxscaffold_4G00314180 Rroxscaffold_4G00328590 Rroxscaffold_4G00328600 Rroxscaffold_4G00328610 Rroxscaffold_4G00328630 Rroxscaffold_4G00328660 Rroxscaffold_5G00335450 Rroxscaffold_5G00339060 Rroxscaffold_5G00339150 Rroxscaffold_5G00352800 Rroxscaffold_5G00352850 Rroxscaffold_5G00356810 Rroxscaffold_5G00360770 Rroxscaffold_5G00360790 Rroxscaffold_6G00389560 Rroxscaffold_6G00389570 Rroxscaffold_7G00208730
rosa_rugosa Rorug01G0026700 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0135800.1 Rorug01G0215700 Rorug01G0215800 Rorug02G0237600 Rorug03G0200000 Rorug03G0201000 Rorug03G0201000 Rorug03G0216500 Rorug03G0216600 Rorug03G0216700 Rorug03G0323200 Rorug03G0323300 Rorug03G0369600.1 Rorug04G0085100 Rorug04G0114900 Rorug04G0114900 Rorug04G0115000 Rorug04G0145500 Rorug04G0416300 Rorug04G0416400 Rorug04G0416500 Rorug04G0416500 Rorug04G0416600 Rorug04G0416700 Rorug04G0416800 Rorug04G0416900 Rorug04G0416900 Rorug05G0144400 Rorug05G0144500 Rorug05G0572000 Rorug05G0572400 Rorug07G0266600
rosa_samantha Rh1BG009800 Rh1BG026600 Rh1BG034900 Rh1BG035000 Rh1BG035100 Rh1BG035700 Rh1BG037200 Rh1BG105100 Rh1BG124400 Rh1BG211400 Rh1CG037700 Rh1CG037800 Rh2CG283600 Rh2CG284000 Rh2CG530500 Rh2DG320800 Rh3AG266400 Rh3DG296100 Rh3DG296200 Rh3DG296300 Rh3DG362500 Rh3DG362700 Rh4BG020700 Rh4BG020900 Rh4BG046500 Rh4BG046600 Rh4BG047300 Rh4BG146800 Rh4BG146900 Rh4BG173900 Rh5AG043300 Rh5AG043800 Rh5AG043900 Rh5AG044100 Rh5AG044200 Rh5CG048900 Rh5CG049100 Rh5CG049300 Rh5CG049400 Rh5CG049600 Rh5CG049800 Rh5CG049900 Rh5CG050000 Rh5CG050100 Rh5CG050200 Rh5CG050400 Rh5CG050500 Rh5CG050600 Rh5CG050700 Rh5CG050800 Rh5CG050900 Rh5CG051000 Rh5CG051100 Rh5CG051200 Rh5CG051300 Rh5CG051600 Rh5CG051800 Rh7BG395400
rosa_wichuraiana Rw0G000430 Rw0G000480 Rw1G003030 Rw1G003070 Rw1G003080 Rw1G003100 Rw1G003110 Rw1G003270 Rw1G012730 Rw1G012760 Rw2G023620 Rw2G045230 Rw3G023770 Rw3G026730 Rw3G028610 Rw4G004000 Rw4G012230 Rw4G014640 Rw4G018320 Rw5G004220 Rw5G004230 Rw5G004240 Rw5G004250 Rw5G004260 Rw5G004270 Rw5G004280 Rw5G004290 Rw5G004300 Rw5G004320 Rw5G004330 Rw5G004340 Rw5G004350 Rw5G004380 Rw5G004400 Rw5G004410 Rw5G004420 Rw5G004430 Rw5G004440 Rw5G004450 Rw5G004460 Rw6G007850 Rw7G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1475, 1502
Acc16I TGCGCA 2 cut(s) 1421, 2379
AccB1I GGYRCC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 787
AccII CGCG 1 cut(s) 1383
AccIII TCCGGA 2 cut(s) 340, 2056
AciI CCGC 4 cut(s) 242, 398, 624, 1251
AclWI GGATC 6 cut(s) 565, 610, 1266, 1481, 1727, 1799
AcsI RAATTY 5 cut(s) 4, 520, 1286, 1447, 1965
AcuI CTGAAG 3 cut(s) 133, 812, 1032
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 948
AfiI CCNNNNNNNGG 1 cut(s) 2073
AflII CTTAAG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 872
AjnI CCWGG 5 cut(s) 439, 457, 512, 1170, 1215
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 2058, 2360
AlwI GGATC 6 cut(s) 565, 610, 1266, 1481, 1727, 1799
Ama87I CYCGRG 1 cut(s) 1645
Aor13HI TCCGGA 2 cut(s) 340, 2056
AoxI GGCC 3 cut(s) 840, 1579, 2327
ApeKI GCWGC 8 cut(s) 362, 719, 1137, 1352, 1731, 2318, 2380, 2389
ApoI RAATTY 5 cut(s) 4, 520, 1286, 1447, 1965
AseI ATTAAT 1 cut(s) 1526
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 4 cut(s) 100, 1385, 1422, 2380
AspS9I GGNCC 6 cut(s) 626, 841, 878, 1212, 1219, 1580
AsuHPI GGTGA 3 cut(s) 455, 827, 2392
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 1645
AvaII GGWCC 4 cut(s) 626, 878, 1212, 1219
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 415
BarI GAAGNNNNNNTAC 2 cut(s) 1774, 1806
BbsI GAAGAC 2 cut(s) 800, 1068
Bbv12I GWGCWC 1 cut(s) 415
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 8 cut(s) 349, 731, 1124, 1339, 1718, 2305, 2392, 2401
BccI CCATC 4 cut(s) 299, 463, 1498, 1893
BcgI CGANNNNNNTGC 2 cut(s) 2272, 2306
BciT130I CCWGG 5 cut(s) 441, 459, 514, 1172, 1217
BciVI GTATCC 2 cut(s) 1783, 2192
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 2 cut(s) 2058, 2360
BfaI CTAG 6 cut(s) 267, 1274, 1638, 1866, 2177, 2186
BfmI CTRYAG 6 cut(s) 363, 733, 1138, 1353, 2101, 2319
BfrI CTTAAG 1 cut(s) 31
BfuI GTATCC 2 cut(s) 1783, 2192
BisI GCNGC 9 cut(s) 242, 363, 720, 1138, 1353, 1732, 2319, 2381, 2390
BlpI GCTNAGC 1 cut(s) 358
BlsI GCNGC 9 cut(s) 243, 364, 721, 1139, 1354, 1733, 2320, 2382, 2391
Bme1390I CCNGG 5 cut(s) 441, 459, 514, 1172, 1217
Bme18I GGWCC 4 cut(s) 626, 878, 1212, 1219
BmeT110I CYCGRG 1 cut(s) 1645
BmgT120I GGNCC 6 cut(s) 626, 841, 878, 1212, 1219, 1580
BmiI GGNNCC 3 cut(s) 564, 1214, 1582
BmrFI CCNGG 5 cut(s) 441, 459, 514, 1172, 1217
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 4 cut(s) 1270, 1557, 2270, 2273
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 2 cut(s) 800, 1068
BplI GAGNNNNNCTC 2 cut(s) 1245, 1277
BpmI CTGGAG 1 cut(s) 637
Bpu10I CCTNAGC 3 cut(s) 63, 2357, 2385
Bpu1102I GCTNAGC 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 314, 980
BsaBI GATNNNNATC 2 cut(s) 675, 1685
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 261, 629, 1215
BsaWI WCCGGW 2 cut(s) 340, 2056
BsaXI ACNNNNNCTCC 6 cut(s) 335, 365, 610, 640, 981, 1011
Bsc4I CCNNNNNNNGG 1 cut(s) 2073
Bse118I RCCGGY 1 cut(s) 2135
Bse1I ACTGG 6 cut(s) 385, 827, 839, 1040, 1252, 1986
Bse8I GATNNNNATC 2 cut(s) 675, 1685
BseAI TCCGGA 2 cut(s) 340, 2056
BseBI CCWGG 5 cut(s) 441, 459, 514, 1172, 1217
BseDI CCNNGG 3 cut(s) 261, 629, 1215
BseGI GGATG 3 cut(s) 406, 673, 1951
BseJI GATNNNNATC 2 cut(s) 675, 1685
BseLI CCNNNNNNNGG 1 cut(s) 2073
BseMII CTCAG 5 cut(s) 54, 372, 593, 1160, 2036
BseNI ACTGG 6 cut(s) 385, 827, 839, 1040, 1252, 1986
BseRI GAGGAG 3 cut(s) 423, 1584, 1833
BseXI GCAGC 8 cut(s) 349, 731, 1124, 1339, 1718, 2305, 2392, 2401
BseYI CCCAGC 2 cut(s) 122, 574
Bsh1236I CGCG 1 cut(s) 1383
BshFI GGCC 3 cut(s) 842, 1581, 2329
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 1645
BsiSI CCGG 3 cut(s) 341, 2057, 2136
BslFI GGGAC 4 cut(s) 117, 1198, 1469, 2014
BslI CCNNNNNNNGG 1 cut(s) 2073
BsmAI GTCTC 2 cut(s) 2058, 2360
BsmFI GGGAC 4 cut(s) 117, 1198, 1469, 2014
BsnI GGCC 3 cut(s) 842, 1581, 2329
BsoBI CYCGRG 1 cut(s) 1645
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 415
Bsp13I TCCGGA 2 cut(s) 340, 2056
Bsp1720I GCTNAGC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 629
BspACI CCGC 4 cut(s) 242, 398, 624, 1251
BspANI GGCC 3 cut(s) 842, 1581, 2329
BspCNI CTCAG 5 cut(s) 55, 371, 592, 1159, 2035
BspEI TCCGGA 2 cut(s) 340, 2056
BspFNI CGCG 1 cut(s) 1383
BspHI TCATGA 2 cut(s) 1105, 1888
BspLI GGNNCC 3 cut(s) 564, 1214, 1582
BspMAI CTGCAG 5 cut(s) 367, 737, 1142, 1357, 2323
BspPI GGATC 6 cut(s) 565, 610, 1266, 1481, 1727, 1799
BspQI GCTCTTC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 562
BspTI CTTAAG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 2135
BsrI ACTGG 6 cut(s) 385, 827, 839, 1040, 1252, 1986
BssAI RCCGGY 1 cut(s) 2135
BssECI CCNNGG 3 cut(s) 261, 629, 1215
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 261, 629
Bst2UI CCWGG 5 cut(s) 441, 459, 514, 1172, 1217
Bst4CI ACNGT 2 cut(s) 785, 1635
Bst6I CTCTTC 5 cut(s) 419, 781, 1656, 1800, 1810
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 6 cut(s) 38, 246, 1987, 2137, 2285, 2306
BstDEI CTNAG 9 cut(s) 63, 358, 579, 680, 1146, 1443, 2022, 2357, 2385
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 406, 673, 1951
BstFNI CGCG 1 cut(s) 1383
BstHHI GCGC 4 cut(s) 100, 1385, 1422, 2380
BstMAI GTCTC 2 cut(s) 2058, 2360
BstMWI GCNNNNNNNGC 7 cut(s) 272, 621, 1545, 2293, 2386, 2389, 2462
BstNI CCWGG 5 cut(s) 441, 459, 514, 1172, 1217
BstNSI RCATGY 2 cut(s) 876, 2287
BstSCI CCNGG 5 cut(s) 439, 457, 512, 1170, 1215
BstSFI CTRYAG 6 cut(s) 363, 733, 1138, 1353, 2101, 2319
BstUI CGCG 1 cut(s) 1383
BstV1I GCAGC 8 cut(s) 349, 731, 1124, 1339, 1718, 2305, 2392, 2401
BstV2I GAAGAC 2 cut(s) 800, 1068
BstX2I RGATCY 2 cut(s) 570, 1258
BstYI RGATCY 2 cut(s) 570, 1258
BsuI GTATCC 2 cut(s) 1783, 2192
BsuRI GGCC 3 cut(s) 842, 1581, 2329
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 3 cut(s) 406, 673, 1951
BtsI GCAGTG 1 cut(s) 1429
BtsIMutI CAGTG 4 cut(s) 378, 1154, 1245, 1429
Cac8I GCNNGC 6 cut(s) 38, 246, 1987, 2137, 2285, 2306
CciI TCATGA 2 cut(s) 1105, 1888
CfoI GCGC 4 cut(s) 100, 1385, 1422, 2380
Cfr10I RCCGGY 1 cut(s) 2135
Cfr13I GGNCC 6 cut(s) 626, 841, 878, 1212, 1219, 1580
CseI GACGC 3 cut(s) 266, 711, 2011
Csp6I GTAC 1 cut(s) 947
CviQI GTAC 1 cut(s) 947
DdeI CTNAG 9 cut(s) 63, 358, 579, 680, 1146, 1443, 2022, 2357, 2385
Eam1104I CTCTTC 5 cut(s) 419, 781, 1656, 1800, 1810
EarI CTCTTC 5 cut(s) 419, 781, 1656, 1800, 1810
EciI GGCGGA 1 cut(s) 1266
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 261, 629
Eco24I GRGCYC 1 cut(s) 415
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 4 cut(s) 626, 878, 1212, 1219
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 3 cut(s) 133, 812, 1032
Eco88I CYCGRG 1 cut(s) 1645
EcoICRI GAGCTC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 1219
EcoRI GAATTC 2 cut(s) 4, 1447
EcoRII CCWGG 5 cut(s) 439, 457, 512, 1170, 1215
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 261, 629
EcoT22I ATGCAT 4 cut(s) 1183, 2197, 2285, 2289
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 261, 629
FaqI GGGAC 4 cut(s) 117, 1198, 1469, 2014
FauNDI CATATG 1 cut(s) 690
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 9 cut(s) 242, 363, 720, 1138, 1353, 1732, 2319, 2381, 2390
FokI GGATG 3 cut(s) 413, 680, 1958
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 9 cut(s) 242, 363, 720, 1138, 1353, 1732, 2319, 2381, 2390
FspBI CTAG 6 cut(s) 267, 1274, 1638, 1866, 2177, 2186
FspI TGCGCA 2 cut(s) 1421, 2379
GlaI GCGC 4 cut(s) 99, 1384, 1421, 2379
GluI GCNGC 9 cut(s) 242, 363, 720, 1138, 1353, 1732, 2319, 2381, 2390
GsaI CCCAGC 2 cut(s) 126, 578
GsuI CTGGAG 1 cut(s) 637
HaeIII GGCC 3 cut(s) 842, 1581, 2329
HapII CCGG 3 cut(s) 341, 2057, 2136
HgaI GACGC 3 cut(s) 266, 711, 2011
HhaI GCGC 4 cut(s) 100, 1385, 1422, 2380
Hin1I GRCGYC 1 cut(s) 258
Hin6I GCGC 4 cut(s) 98, 1383, 1420, 2378
HinP1I GCGC 4 cut(s) 98, 1383, 1420, 2378
HindIII AAGCTT 2 cut(s) 34, 1783
HinfI GANTC 7 cut(s) 344, 530, 850, 905, 1144, 1892, 2252
HpaII CCGG 3 cut(s) 341, 2057, 2136
HphI GGTGA 3 cut(s) 455, 827, 2392
Hpy166II GTNNAC 4 cut(s) 788, 878, 1090, 1588
Hpy8I GTNNAC 4 cut(s) 788, 878, 1090, 1588
HpyAV CCTTC 9 cut(s) 1289, 1601, 1606, 1897, 1918, 2020, 2207, 2413, 2477
HpyCH4III ACNGT 2 cut(s) 785, 1635
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 621, 1545, 2293, 2386, 2389, 2462
HpyF3I CTNAG 9 cut(s) 63, 358, 579, 680, 1146, 1443, 2022, 2357, 2385
Hsp92I GRCGYC 1 cut(s) 258
HspAI GCGC 4 cut(s) 98, 1383, 1420, 2378
Kpn2I TCCGGA 2 cut(s) 340, 2056
KroI GCCGGC 1 cut(s) 2135
KroNI GCCGGC 1 cut(s) 2137
Ksp22I TGATCA 1 cut(s) 670
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 410, 716, 2159, 2361
Lsp1109I GCAGC 8 cut(s) 349, 731, 1124, 1339, 1718, 2305, 2392, 2401
LweI GCATC 4 cut(s) 1270, 1557, 2270, 2273
MaeI CTAG 6 cut(s) 267, 1274, 1638, 1866, 2177, 2186
MaeIII GTNAC 7 cut(s) 443, 898, 954, 1025, 1186, 1377, 1408
MfeI CAATTG 1 cut(s) 2334
MflI RGATCY 2 cut(s) 570, 1258
MhlI GDGCHC 1 cut(s) 415
MlyI GAGTC 3 cut(s) 353, 844, 1138
MmeI TCCRAC 1 cut(s) 1723
Mph1103I ATGCAT 4 cut(s) 1183, 2197, 2285, 2289
MroI TCCGGA 2 cut(s) 340, 2056
MroNI GCCGGC 1 cut(s) 2135
MroXI GAANNNNTTC 1 cut(s) 941
MseI TTAA 8 cut(s) 32, 279, 597, 831, 1205, 1313, 1526, 1737
MslI CAYNNNNRTG 3 cut(s) 57, 1333, 2442
MspA1I CMGCKG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 3 cut(s) 341, 2057, 2136
MspR9I CCNGG 5 cut(s) 441, 459, 514, 1172, 1217
MunI CAATTG 1 cut(s) 2334
MvaI CCWGG 5 cut(s) 441, 459, 514, 1172, 1217
MvnI CGCG 1 cut(s) 1383
MwoI GCNNNNNNNGC 7 cut(s) 272, 621, 1545, 2293, 2386, 2389, 2462
NaeI GCCGGC 1 cut(s) 2137
NcoI CCATGG 1 cut(s) 629
NdeI CATATG 1 cut(s) 690
NgoMIV GCCGGC 1 cut(s) 2135
NlaIV GGNNCC 3 cut(s) 564, 1214, 1582
NmuCI GTSAC 2 cut(s) 443, 954
NsbI TGCGCA 2 cut(s) 1421, 2379
NsiI ATGCAT 4 cut(s) 1183, 2197, 2285, 2289
NspI RCATGY 2 cut(s) 876, 2287
NspV TTCGAA 1 cut(s) 135
PaeI GCATGC 1 cut(s) 2287
PagI TCATGA 2 cut(s) 1105, 1888
PciI ACATGT 1 cut(s) 872
PciSI GCTCTTC 1 cut(s) 419
PdiI GCCGGC 1 cut(s) 2137
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 4 cut(s) 530, 905, 1892, 2252
PfoI TCCNGGA 1 cut(s) 457
PkrI GCNGC 9 cut(s) 243, 364, 721, 1139, 1354, 1733, 2320, 2382, 2391
PleI GAGTC 3 cut(s) 352, 844, 1138
PpsI GAGTC 3 cut(s) 352, 844, 1138
PpuMI RGGWCCY 1 cut(s) 1219
PscI ACATGT 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 1526
PsiI TTATAA 2 cut(s) 1475, 1502
Psp124BI GAGCTC 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 1219
Psp6I CCWGG 5 cut(s) 439, 457, 512, 1170, 1215
PspFI CCCAGC 2 cut(s) 122, 574
PspGI CCWGG 5 cut(s) 439, 457, 512, 1170, 1215
PspN4I GGNNCC 3 cut(s) 564, 1214, 1582
PspPI GGNCC 6 cut(s) 626, 841, 878, 1212, 1219, 1580
PspPPI RGGWCCY 1 cut(s) 1219
PstI CTGCAG 5 cut(s) 367, 737, 1142, 1357, 2323
PsuI RGATCY 2 cut(s) 570, 1258
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 948
RsaNI GTAC 1 cut(s) 947
RseI CAYNNNNRTG 3 cut(s) 57, 1333, 2442
SacI GAGCTC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 8 cut(s) 32, 279, 597, 831, 1205, 1313, 1526, 1737
SatI GCNGC 9 cut(s) 242, 363, 720, 1138, 1353, 1732, 2319, 2381, 2390
Sau96I GGNCC 6 cut(s) 626, 841, 878, 1212, 1219, 1580
SchI GAGTC 3 cut(s) 353, 844, 1138
ScrFI CCNGG 5 cut(s) 441, 459, 514, 1172, 1217
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 4 cut(s) 1270, 1557, 2270, 2273
SfcI CTRYAG 6 cut(s) 363, 733, 1138, 1353, 2101, 2319
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 4 cut(s) 626, 878, 1212, 1219
SmiMI CAYNNNNRTG 3 cut(s) 57, 1333, 2442
SmlI CTYRAG 3 cut(s) 31, 293, 959
SmoI CTYRAG 3 cut(s) 31, 293, 959
SphI GCATGC 1 cut(s) 2287
SsiI CCGC 4 cut(s) 242, 398, 624, 1251
SspI AATATT 3 cut(s) 337, 1849, 1936
SspMI CTAG 6 cut(s) 267, 1274, 1638, 1866, 2177, 2186
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 5 cut(s) 439, 457, 512, 1170, 1215
StyI CCWWGG 2 cut(s) 261, 629
TaaI ACNGT 2 cut(s) 785, 1635
TaqI TCGA 4 cut(s) 135, 1464, 1803, 2481
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 4 cut(s) 530, 905, 1892, 2252
Tru1I TTAA 8 cut(s) 32, 279, 597, 831, 1205, 1313, 1526, 1737
Tru9I TTAA 8 cut(s) 32, 279, 597, 831, 1205, 1313, 1526, 1737
TscAI CASTG 4 cut(s) 385, 1154, 1252, 1429
TseFI GTSAC 2 cut(s) 443, 954
TseI GCWGC 8 cut(s) 362, 719, 1137, 1352, 1731, 2318, 2380, 2389
Tsp45I GTSAC 2 cut(s) 443, 954
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 4 cut(s) 385, 1154, 1252, 1429
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 4 cut(s) 626, 878, 1212, 1219
VspI ATTAAT 1 cut(s) 1526
XapI RAATTY 5 cut(s) 4, 520, 1286, 1447, 1965
XceI RCATGY 2 cut(s) 876, 2287
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XmiI GTMKAC 1 cut(s) 787
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 6 cut(s) 267, 1274, 1638, 1866, 2177, 2186
Zsp2I ATGCAT 4 cut(s) 1183, 2197, 2285, 2289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.