MD05G1331200.v1.1

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000033
Physical Location & Seq
Forward (+)
45518568 .. 45521968
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1331200.v1.1.491

Sequence Viewer

Length: 2538 bp
ATGGGGTTTGGAAAGGAAACCATTGGTAGTATTTTCGATTCCACCATGTTCGTCCTAATTTTGTTCACCTTGCTGCTGTCACAGCATCAGTGTGCTGAAGTTTATGAGATAACTCCGTCACAACCATTTTCACAGACACAAACCCTTGTCTCCCCCAGCCGCATTTTCGAATTGGGGTTCTTCAGTCCTAATGGTTCGGTTAACAAGTACGTGGGGATATGGCACACGAACATATCTCCGCGGAAAGTTGTATGGGTTGCCAACAGAGAAAACCCTCTTGCAGCTTCAGATACCTTGGCTAATTTGACAATTAGCAGCAATGGGAATCTGGAGCTTGTAGATGGGAAGCAGAATTCTCTTTGGTCAACGAATATTTCGGTGCCATCTAATGGTTCAGCTGCAGAGCTTTTGGACAGCGGAAATCTTGTCGTAAAAGATGATGATGTCGGTGCTGATCCATTGTGGCAGAGTTTTGATTATCCTAGTGACACACTTCTACCAAATATGGTGCTGGAATTCGATAGTAAATCCGGAAAGCGCAGTTTAATGAAAGCCTGGAAAAGTGAGATTGATCCATCAGCTGGCTTGTTCTGGGCTGGACTTTCACGGGACGTTCCATCACAAGTGTTCATTTGGATTAATGAATCGAAACCCTACTGGAGAAGTGGGGCATGGGATAAATCAAGGTTCATCGGGGTACCGGATATGAATAATCAATATCTAAGTGGATTCACTCTAAATGATGATGTGAACCCGGGAACAAAATCTTTTTCCTACAGGTTTTTTGACAATTCGCTTTCATATCTTGGCATCTCTTCGGATGGAGTACTGAATCTTAAGCTTTCGGACAATGGCAGCAACTGGTGGCTTAACTGGGAGGCACCGGTGAATCCATGCGACATTTATGGAACATGTGGTGTTTATGGTGTCTGCAAAGGTTCTGAATCTCCAAATCCAAATTGCGAGTGTTTGAAAGGGTTTGTACCAAAATCAAATGAGGAATGGAGCAACGGAAACAGGACTGGAGGGTGTGTGAGGACCACCGAATTGTTTTGTGATCAGAGTAACACAAGCAGGTCATTTGCTTCAGGAGGAAAAGAAGATGGCTTTCGGAAGATGGTGGGATTAAAGCTACCAGATTTTCATGAGCTTATCGAAAATCTGGAGGCTGACGAGTGCAAGATACGATGCCTAAATAATTGTTCTTGTCAGGCTTATGCGCAAGTTAATAATATAGGGTGTTTGGTCTGGTCCAGTGACCTTATTGATATACAAGAGTTTACATTTGGAGGGAACGATCTTTATATTCGCCTAGCACACGGAGAATTAGATGAAGGAAAGCCTGTAAAGCTAATTGCTAGCGTCACTGCTGTTGGTTTTATCAGTATCTTGAGTGCCATAGCTTTCGGTGTTCAGAGACTGCGCGGTAAAAAAACAGGGAACACGAAAGAAAAAACAAAGTTAATGCAGTTGAATCATACAAGTGATAATTCAAGGGACAATCTTCAAGAATACATAAGAAAACATGATCCATCGGAGCTATTCATCTACGATTTTGACAGCATATTAAATGCCACAAACAATTTCAGCACCATGAACAAACTCGGGGAAGGAGGTTTCGGCCCTGTTTACAAGGGTAAGCTACAAGAAGGAAAGGAAATAGCAGTAAAACGACTATCTAGTAGCTCGGGGCAAGGCATAGAGGAGTTCAAGAATGAGATGCTGTTGATCTCCAAACTCCAACACAAGAATCTTGTTAGGATCATGGGCTGCTGCGTCAAGGACGATGAAAAGTTACTGATTTATGAGTTCATGCCTAACAGAAGCTTGGATACTCTTCTATTCGATCCAAAGCGCAAAGCAGAGCTTGATTGGGCTAGACGCTTCAATATTATTCAGGGAGTTGCTAGAGGGCTTCTTTATCTCCACCACGATTCCCGTTTGAAGGTAATCCATAGAGATTTGAAGGTTAGTAACATTCTCTTGGATGAGAATATGAACCCAAAAATTTCAGATTTTGGATTGGCACGAATCGTTGAAGCAACACAGAGTCTAGCAAATACTCACAAGGTTGTGGGAACACTTGGCTATATGTCTCCCGAATACGCCATGGGTGGGATATTTTCTGAAAAATCTGATGTCTATAGCTTTGGTGTCTTGCTATTGGAGATTATCGCCGGCAAAAAGAATACTAGCTTCTATTACAACGAAGAACAGCACGGATTTTTAGCTTATGTTTGGCACTTATGGAATGAAGGCAGGGGACTGGACTTGCTGGATGAAGTATTGGCGGATTCATATTCGTCATCAGAAGTAACAAGATGCATGCATATCGGACTTCTCTGCGTACAGGACAAGTCTGAAGATAGGCCAATCATGCCGGACGTAGTTTTCACACTAAGTAGTGAGACGAATCTTCCACTACCTAAGCAGCCTATATTTTCTAATTTCCGAAACGCAGTCTATAATCCTCAACCTCAATATGACAATATTTTCTCTGCAAATGAAGAAACTATAACCATTATCGAAGGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

846

Amino Acids

94.54

Weight (kDa)

5.33

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 83 - 187 6.8e-32 D-mannose binding lectin
S_locus_glycop PF00954 220 - 331 1.6e-27 S-locus glycoprotein domain
PAN_2 PF08276 366 - 424 5.3e-17 PAN-like domain
Pkinase PF00069 530 - 730 7.9e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 531 - 738 6.9e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G61370 AT1G61370 AT1G61380 AT1G61390 AT1G61390 AT1G61400 AT1G61400 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61440 AT1G61440 AT1G61440 AT1G61460 AT1G61475 AT1G61480 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61500 AT1G61500 AT1G61500 AT1G61550
fragaria_vesca FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_2g05942 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03432 FvH4_3g03433 FvH4_3g03434 FvH4_3g03450 FvH4_3g03451 FvH4_3g03460 FvH4_3g03461 FvH4_3g03481 FvH4_3g03482 FvH4_3g03501 FvH4_3g03502 FvH4_3g03520 FvH4_3g03521 FvH4_3g03560 FvH4_3g03560 FvH4_3g03581 FvH4_3g03581 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g32570
malus_domestica MD05G1329700.v1.1 MD05G1329900.v1.1 MD05G1330000.v1.1 MD05G1330100.v1.1 MD05G1330200.v1.1 MD05G1330400.v1.1 MD05G1330600.v1.1 MD05G1330700.v1.1 MD05G1330800.v1.1 MD05G1331000.v1.1 MD05G1331100.v1.1 MD05G1331200.v1.1 MD05G1331300.v1.1 MD05G1331400.v1.1 MD05G1331500.v1.1 MD05G1331600.v1.1 MD05G1331700.v1.1 MD10G1306700.v1.1 MD10G1306800.v1.1 MD10G1306900.v1.1 MD10G1307300.v1.1 MD10G1307500.v1.1 MD17G1248100.v1.1 MD17G1249300.v1.1 MD17G1249500.v1.1 MD17G1249800.v1.1
prunus_persica Prupe.4G032500_v2.0.a1 Prupe.4G032600_v2.0.a1 Prupe.4G032700_v2.0.a1 Prupe.4G032900_v2.0.a1 Prupe.4G033000_v2.0.a1
pyrus_communis pycom05g30280 pycom05g30290 pycom05g30300 pycom05g30310 pycom05g30330 pycom05g30360 pycom05g30380 pycom10g25890 pycom10g25910 pycom17g24930 pycom17g24940 pycom17g25000 pycom17g25060 pycom17g25350
rosa_chinensis RchiOBHm_Chr1g0319071 RchiOBHm_Chr1g0319131 RchiOBHm_Chr1g0319141 RchiOBHm_Chr1g0319161 RchiOBHm_Chr1g0319181 RchiOBHm_Chr1g0319221 RchiOBHm_Chr1g0319231 RchiOBHm_Chr1g0319241 RchiOBHm_Chr1g0319311 RchiOBHm_Chr1g0334421 RchiOBHm_Chr1g0337491 RchiOBHm_Chr1g0337661 RchiOBHm_Chr1g0337691 RchiOBHm_Chr1g0337791 RchiOBHm_Chr1g0352251 RchiOBHm_Chr2g0122431 RchiOBHm_Chr2g0160101 RchiOBHm_Chr3g0485161 RchiOBHm_Chr3g0485171 RchiOBHm_Chr4g0389441 RchiOBHm_Chr4g0389451 RchiOBHm_Chr4g0392601 RchiOBHm_Chr4g0393961 RchiOBHm_Chr4g0393991 RchiOBHm_Chr4g0394071 RchiOBHm_Chr4g0394091 RchiOBHm_Chr4g0394151 RchiOBHm_Chr4g0408281 RchiOBHm_Chr4g0408311 RchiOBHm_Chr4g0416941 RchiOBHm_Chr5g0005231 RchiOBHm_Chr5g0005241 RchiOBHm_Chr5g0005261 RchiOBHm_Chr5g0005291 RchiOBHm_Chr5g0005301 RchiOBHm_Chr5g0005311 RchiOBHm_Chr5g0005321 RchiOBHm_Chr5g0005331 RchiOBHm_Chr5g0005341 RchiOBHm_Chr5g0005351 RchiOBHm_Chr5g0005361 RchiOBHm_Chr5g0005371 RchiOBHm_Chr5g0005381 RchiOBHm_Chr5g0005391 RchiOBHm_Chr5g0005411 RchiOBHm_Chr5g0005421 RchiOBHm_Chr5g0005441 RchiOBHm_Chr5g0005451 RchiOBHm_Chr5g0005471 RchiOBHm_Chr5g0005521 RchiOBHm_Chr5g0005531 RchiOBHm_Chr5g0005541 RchiOBHm_Chr5g0005551 RchiOBHm_Chr5g0005571 RchiOBHm_Chr5g0005581 RchiOBHm_Chr5g0005631 RchiOBHm_Chr7g0211391 RchiOBHm_Chr7g0222041 RchiOBHm_Chr7g0222051 RchiOBHm_Chr7g0222061 RchiOBHm_Chr7g0222071 RchiOBHm_Chr7g0231441
rosa_laevigata RLG00000007941 RLG00000007942 RLG00000007943 RLG00000008271 RLG00000008656 RLG00000009719 RLG00000009722 RLG00000009981 RLG00000014698 RLG00000018673 RLG00000018675 RLG00000021197 RLG00000022560 RLG00000022561 RLG00000022562 RLG00000022563 RLG00000029269 RLG00000029456 RLG00000030495 RLG00000030497 RLG00000030499 RLG00000030501 RLG00000030505 RLG00000031302 RLG00000031304 RLG00000031305 RLG00000031306 RLG00000031308 RLG00000031309 RLG00000031310 RLG00000031313 RLG00000031343 RLG00000031344 RLG00000031386
rosa_multiflora Rmu_co8145070.1_g000001 Rmu_co8220846.1_g000001 Rmu_co8338791.1_g000001 Rmu_co8346441.1_g000001 Rmu_co8405641.1_g000001 Rmu_co8485383.1_g000001 Rmu_co8515907.1_g000001 Rmu_sc0000570.1_g000001 Rmu_sc0000570.1_g000008 Rmu_sc0000570.1_g000019 Rmu_sc0000570.1_g000020 Rmu_sc0000570.1_g000021 Rmu_sc0000942.1_g000001 Rmu_sc0000942.1_g000029 Rmu_sc0001199.1_g000004 Rmu_sc0001199.1_g000005 Rmu_sc0001199.1_g000006 Rmu_sc0001199.1_g000007 Rmu_sc0001199.1_g000008 Rmu_sc0001199.1_g000009 Rmu_sc0001543.1_g000005 Rmu_sc0002023.1_g000008 Rmu_sc0002498.1_g000016 Rmu_sc0002539.1_g000034 Rmu_sc0002772.1_g000013 Rmu_sc0002786.1_g000018 Rmu_sc0003301.1_g000009 Rmu_sc0003338.1_g000007 Rmu_sc0003338.1_g000011 Rmu_sc0003428.1_g000003 Rmu_sc0003574.1_g000001 Rmu_sc0003574.1_g000008 Rmu_sc0003832.1_g000025 Rmu_sc0004149.1_g000004 Rmu_sc0004553.1_g000006 Rmu_sc0004950.1_g000008 Rmu_sc0005072.1_g000017 Rmu_sc0006085.1_g000002 Rmu_sc0006981.1_g000007 Rmu_sc0009469.1_g000003 Rmu_sc0010358.1_g000001 Rmu_sc0014528.1_g000003 Rmu_sc0014528.1_g000005 Rmu_sc0014528.1_g000006 Rmu_sc0018903.1_g000009 Rmu_sc0021494.1_g000001 Rmu_sc0022096.1_g000001 Rmu_sc0025170.1_g000001 Rmu_sc0025170.1_g000002 Rmu_sc0025170.1_g000003 Rmu_sc0025818.1_g000001 Rmu_sc0026277.1_g000001 Rmu_sc0034649.1_g000001 Rmu_sc0036724.1_g000001 Rmu_sc0039163.1_g000001
rosa_roxburghii Rroxscaffold_1G00070200 Rroxscaffold_1G00070210 Rroxscaffold_1G00070260 Rroxscaffold_1G00070270 Rroxscaffold_1G00070280 Rroxscaffold_1G00070290 Rroxscaffold_1G00070300 Rroxscaffold_1G00070320 Rroxscaffold_1G00070340 Rroxscaffold_1G00070350 Rroxscaffold_1G00070360 Rroxscaffold_1G00070370 Rroxscaffold_1G00070380 Rroxscaffold_1G00070390 Rroxscaffold_1G00070410 Rroxscaffold_1G00070420 Rroxscaffold_1G00070440 Rroxscaffold_2G00090040 Rroxscaffold_2G00121670 Rroxscaffold_2G00121720 Rroxscaffold_3G00229310 Rroxscaffold_4G00314020 Rroxscaffold_4G00314180 Rroxscaffold_4G00328590 Rroxscaffold_4G00328600 Rroxscaffold_4G00328610 Rroxscaffold_4G00328630 Rroxscaffold_4G00328660 Rroxscaffold_5G00335450 Rroxscaffold_5G00339060 Rroxscaffold_5G00339150 Rroxscaffold_5G00352800 Rroxscaffold_5G00352850 Rroxscaffold_5G00356810 Rroxscaffold_5G00360770 Rroxscaffold_5G00360790 Rroxscaffold_6G00389560 Rroxscaffold_6G00389570 Rroxscaffold_7G00208730
rosa_rugosa Rorug01G0026700 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0135800.1 Rorug01G0215700 Rorug01G0215800 Rorug02G0237600 Rorug03G0200000 Rorug03G0201000 Rorug03G0201000 Rorug03G0216500 Rorug03G0216600 Rorug03G0216700 Rorug03G0323200 Rorug03G0323300 Rorug03G0369600.1 Rorug04G0085100 Rorug04G0114900 Rorug04G0114900 Rorug04G0115000 Rorug04G0145500 Rorug04G0416300 Rorug04G0416400 Rorug04G0416500 Rorug04G0416500 Rorug04G0416600 Rorug04G0416700 Rorug04G0416800 Rorug04G0416900 Rorug04G0416900 Rorug05G0144400 Rorug05G0144500 Rorug05G0572000 Rorug05G0572400 Rorug07G0266600
rosa_samantha Rh1BG009800 Rh1BG026600 Rh1BG034900 Rh1BG035000 Rh1BG035100 Rh1BG035700 Rh1BG037200 Rh1BG105100 Rh1BG124400 Rh1BG211400 Rh1CG037700 Rh1CG037800 Rh2CG283600 Rh2CG284000 Rh2CG530500 Rh2DG320800 Rh3AG266400 Rh3DG296100 Rh3DG296200 Rh3DG296300 Rh3DG362500 Rh3DG362700 Rh4BG020700 Rh4BG020900 Rh4BG046500 Rh4BG046600 Rh4BG047300 Rh4BG146800 Rh4BG146900 Rh4BG173900 Rh5AG043300 Rh5AG043800 Rh5AG043900 Rh5AG044100 Rh5AG044200 Rh5CG048900 Rh5CG049100 Rh5CG049300 Rh5CG049400 Rh5CG049600 Rh5CG049800 Rh5CG049900 Rh5CG050000 Rh5CG050100 Rh5CG050200 Rh5CG050400 Rh5CG050500 Rh5CG050600 Rh5CG050700 Rh5CG050800 Rh5CG050900 Rh5CG051000 Rh5CG051100 Rh5CG051200 Rh5CG051300 Rh5CG051600 Rh5CG051800 Rh7BG395400
rosa_wichuraiana Rw0G000430 Rw0G000480 Rw1G003030 Rw1G003070 Rw1G003080 Rw1G003100 Rw1G003110 Rw1G003270 Rw1G012730 Rw1G012760 Rw2G023620 Rw2G045230 Rw3G023770 Rw3G026730 Rw3G028610 Rw4G004000 Rw4G012230 Rw4G014640 Rw4G018320 Rw5G004220 Rw5G004230 Rw5G004240 Rw5G004250 Rw5G004260 Rw5G004270 Rw5G004280 Rw5G004290 Rw5G004300 Rw5G004320 Rw5G004330 Rw5G004340 Rw5G004350 Rw5G004380 Rw5G004400 Rw5G004410 Rw5G004420 Rw5G004430 Rw5G004440 Rw5G004450 Rw5G004460 Rw6G007850 Rw7G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1221
Acc36I ACCTGC 1 cut(s) 1065
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 3 cut(s) 379, 697, 880
AccB7I CCANNNNNTGG 2 cut(s) 389, 581
AccII CGCG 2 cut(s) 241, 1425
AccIII TCCGGA 1 cut(s) 530
AciI CCGC 6 cut(s) 160, 239, 241, 417, 1425, 2291
AclWI GGATC 5 cut(s) 449, 566, 1523, 1769, 1841
AcsI RAATTY 3 cut(s) 352, 515, 2007
AcuI CTGAAG 5 cut(s) 117, 166, 270, 1071, 2382
AfaI GTAC 5 cut(s) 209, 699, 828, 984, 2349
AfiI CCNNNNNNNGG 4 cut(s) 389, 581, 1945, 2115
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 911
AgeI ACCGGT 1 cut(s) 883
AgsI TTSAA 9 cut(s) 973, 1474, 1494, 1508, 1711, 1888, 1945, 1966, 2039
AjnI CCWGG 1 cut(s) 554
Alw26I GTCTC 4 cut(s) 154, 1411, 2100, 2402
AlwI GGATC 5 cut(s) 449, 566, 1523, 1769, 1841
AlwNI CAGNNNCTG 2 cut(s) 861, 1420
Ama87I CYCGRG 3 cut(s) 754, 1604, 1687
Aor13HI TCCGGA 1 cut(s) 530
AoxI GGCC 2 cut(s) 1621, 2369
ApeKI GCWGC 8 cut(s) 73, 281, 315, 398, 855, 1770, 1773, 2431
ApoI RAATTY 3 cut(s) 352, 515, 2007
AseI ATTAAT 1 cut(s) 639
AsiGI ACCGGT 1 cut(s) 883
Asp718I GGTACC 1 cut(s) 697
AspLEI GCGC 4 cut(s) 540, 1222, 1425, 1857
AspS9I GGNCC 3 cut(s) 1038, 1251, 1622
AsuC2I CCSGG 2 cut(s) 755, 756
AsuHPI GGTGA 2 cut(s) 58, 898
AsuII TTCGAA 1 cut(s) 168
AsuNHI GCTAGC 1 cut(s) 1358
AvaI CYCGRG 3 cut(s) 754, 1604, 1687
AvaII GGWCC 2 cut(s) 1038, 1251
BanI GGYRCC 3 cut(s) 379, 697, 880
BarI GAAGNNNNNNTAC 2 cut(s) 1816, 1848
BbvI GCAGC 8 cut(s) 60, 293, 327, 385, 867, 1757, 1760, 2443
BccI CCATC 8 cut(s) 335, 391, 583, 625, 815, 1097, 1111, 1540
BcgI CGANNNNNNTGC 2 cut(s) 2314, 2348
BciT130I CCWGG 1 cut(s) 556
BciVI GTATCC 1 cut(s) 1825
BclI TGATCA 1 cut(s) 1057
BcnI CCSGG 2 cut(s) 755, 756
BcoDI GTCTC 4 cut(s) 154, 1411, 2100, 2402
BfaI CTAG 8 cut(s) 483, 1313, 1359, 1680, 1878, 1908, 2054, 2193
BfmI CTRYAG 3 cut(s) 399, 775, 2143
BfrI CTTAAG 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 1065
BfuI GTATCC 1 cut(s) 1825
BisI GCNGC 9 cut(s) 74, 160, 282, 316, 399, 856, 1771, 1774, 2432
BlsI GCNGC 9 cut(s) 75, 161, 283, 317, 400, 857, 1772, 1775, 2433
BmcAI AGTACT 1 cut(s) 828
Bme1390I CCNGG 3 cut(s) 556, 755, 756
Bme18I GGWCC 2 cut(s) 1038, 1251
BmeT110I CYCGRG 3 cut(s) 754, 1604, 1687
BmgT120I GGNCC 3 cut(s) 1038, 1251, 1622
BmiI GGNNCC 3 cut(s) 381, 699, 882
BmrFI CCNGG 3 cut(s) 556, 755, 756
BmrI ACTGGG 1 cut(s) 883
BmsI GCATC 5 cut(s) 94, 819, 1178, 1710, 2312
BmtI GCTAGC 1 cut(s) 1362
BmuI ACTGGG 1 cut(s) 883
BpmI CTGGAG 4 cut(s) 350, 679, 1044, 1184
Bpu10I CCTNAGC 1 cut(s) 2427
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 1411
BpuMI CCSGG 2 cut(s) 755, 756
BsaAI YACGTR 1 cut(s) 211
BsaJI CCNNGG 4 cut(s) 239, 294, 754, 2109
BsaWI WCCGGW 3 cut(s) 530, 700, 883
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 581, 1945, 2115
Bse118I RCCGGY 2 cut(s) 883, 2177
Bse1I ACTGG 6 cut(s) 662, 866, 878, 1027, 1254, 2271
Bse3DI GCAATG 1 cut(s) 325
BseAI TCCGGA 1 cut(s) 530
BseBI CCWGG 1 cut(s) 556
BseDI CCNNGG 4 cut(s) 239, 294, 754, 2109
BseGI GGATG 3 cut(s) 826, 1993, 2284
BseLI CCNNNNNNNGG 4 cut(s) 389, 581, 1945, 2115
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 6 cut(s) 662, 866, 878, 1027, 1254, 2271
BseRI GAGGAG 1 cut(s) 1718
BseXI GCAGC 8 cut(s) 60, 293, 327, 385, 867, 1757, 1760, 2443
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 241, 1425
BshFI GGCC 2 cut(s) 1623, 2371
BshNI GGYRCC 3 cut(s) 379, 697, 880
BshTI ACCGGT 1 cut(s) 883
BsiHKCI CYCGRG 3 cut(s) 754, 1604, 1687
BsiSI CCGG 6 cut(s) 531, 701, 755, 884, 2178, 2381
BslFI GGGAC 3 cut(s) 623, 1511, 2277
BslI CCNNNNNNNGG 4 cut(s) 389, 581, 1945, 2115
BsmAI GTCTC 4 cut(s) 154, 1411, 2100, 2402
BsmBI CGTCTC 1 cut(s) 2402
BsmFI GGGAC 3 cut(s) 623, 1511, 2277
BsnI GGCC 2 cut(s) 1623, 2371
BsoBI CYCGRG 3 cut(s) 754, 1604, 1687
Bsp119I TTCGAA 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 530
Bsp143I GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
Bsp19I CCATGG 1 cut(s) 2109
BspACI CCGC 6 cut(s) 160, 239, 241, 417, 1425, 2291
BspANI GGCC 2 cut(s) 1623, 2371
BspEI TCCGGA 1 cut(s) 530
BspFNI CGCG 2 cut(s) 241, 1425
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 3 cut(s) 381, 699, 882
BspMAI CTGCAG 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 1065
BspOI GCTAGC 1 cut(s) 1362
BspPI GGATC 5 cut(s) 449, 566, 1523, 1769, 1841
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 3 cut(s) 379, 697, 880
BspTI CTTAAG 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 2 cut(s) 883, 2177
BsrI ACTGG 6 cut(s) 662, 866, 878, 1027, 1254, 2271
BssAI RCCGGY 2 cut(s) 883, 2177
BssECI CCNNGG 4 cut(s) 239, 294, 754, 2109
BssMI GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
BssT1I CCWWGG 2 cut(s) 294, 2109
Bst2UI CCWGG 1 cut(s) 556
Bst6I CTCTTC 2 cut(s) 820, 1842
BstAFI CTTAAG 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 583, 1360, 2179, 2327
BstDEI CTNAG 3 cut(s) 722, 2399, 2427
BstDSI CCRYGG 2 cut(s) 239, 2109
BstF5I GGATG 3 cut(s) 826, 1993, 2284
BstFNI CGCG 2 cut(s) 241, 1425
BstHHI GCGC 4 cut(s) 540, 1222, 1425, 1857
BstKTI GATC 8 cut(s) 457, 574, 1060, 1300, 1531, 1731, 1764, 1849
BstMAI GTCTC 4 cut(s) 154, 1411, 2100, 2402
BstMBI GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
BstMWI GCNNNNNNNGC 3 cut(s) 82, 1348, 2377
BstNI CCWGG 1 cut(s) 556
BstNSI RCATGY 2 cut(s) 915, 2329
BstSCI CCNGG 3 cut(s) 554, 753, 754
BstSFI CTRYAG 3 cut(s) 399, 775, 2143
BstUI CGCG 2 cut(s) 241, 1425
BstV1I GCAGC 8 cut(s) 60, 293, 327, 385, 867, 1757, 1760, 2443
BsuI GTATCC 1 cut(s) 1825
BsuRI GGCC 2 cut(s) 1623, 2371
BtgI CCRYGG 2 cut(s) 239, 2109
BtsCI GGATG 3 cut(s) 826, 1993, 2284
BtsI GCAGTG 1 cut(s) 1365
BtsIMutI CAGTG 3 cut(s) 95, 1261, 1365
BveI ACCTGC 1 cut(s) 1065
Cac8I GCNNGC 4 cut(s) 583, 1360, 2179, 2327
CaiI CAGNNNCTG 2 cut(s) 861, 1420
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 4 cut(s) 540, 1222, 1425, 1857
Cfr10I RCCGGY 2 cut(s) 883, 2177
Cfr13I GGNCC 3 cut(s) 1038, 1251, 1622
Cfr42I CCGCGG 1 cut(s) 242
Cfr9I CCCGGG 1 cut(s) 754
CseI GACGC 3 cut(s) 1351, 1765, 1890
Csp6I GTAC 5 cut(s) 208, 698, 827, 983, 2348
CspAI ACCGGT 1 cut(s) 883
CviQI GTAC 5 cut(s) 208, 698, 827, 983, 2348
DdeI CTNAG 3 cut(s) 722, 2399, 2427
DpnI GATC 8 cut(s) 456, 573, 1059, 1299, 1530, 1730, 1763, 1848
DpnII GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
Eam1104I CTCTTC 2 cut(s) 820, 1842
EarI CTCTTC 2 cut(s) 820, 1842
EciI GGCGGA 1 cut(s) 2306
Eco130I CCWWGG 2 cut(s) 294, 2109
Eco47I GGWCC 2 cut(s) 1038, 1251
Eco57I CTGAAG 5 cut(s) 117, 166, 270, 1071, 2382
Eco88I CYCGRG 3 cut(s) 754, 1604, 1687
EcoRI GAATTC 2 cut(s) 352, 515
EcoRII CCWGG 1 cut(s) 554
EcoT14I CCWWGG 2 cut(s) 294, 2109
EcoT22I ATGCAT 2 cut(s) 2327, 2331
ErhI CCWWGG 2 cut(s) 294, 2109
Esp3I CGTCTC 1 cut(s) 2402
FalI AAGNNNNNCTT 2 cut(s) 1851, 1883
FaqI GGGAC 3 cut(s) 623, 1511, 2277
FbaI TGATCA 1 cut(s) 1057
Fnu4HI GCNGC 9 cut(s) 74, 160, 282, 316, 399, 856, 1771, 1774, 2432
FokI GGATG 3 cut(s) 833, 2000, 2291
Fsp4HI GCNGC 9 cut(s) 74, 160, 282, 316, 399, 856, 1771, 1774, 2432
FspBI CTAG 8 cut(s) 483, 1313, 1359, 1680, 1878, 1908, 2054, 2193
FspI TGCGCA 1 cut(s) 1221
GlaI GCGC 4 cut(s) 539, 1221, 1424, 1856
GluI GCNGC 9 cut(s) 74, 160, 282, 316, 399, 856, 1771, 1774, 2432
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 4 cut(s) 350, 679, 1044, 1184
HaeIII GGCC 2 cut(s) 1623, 2371
HapII CCGG 6 cut(s) 531, 701, 755, 884, 2178, 2381
HgaI GACGC 3 cut(s) 1351, 1765, 1890
HhaI GCGC 4 cut(s) 540, 1222, 1425, 1857
Hin6I GCGC 4 cut(s) 538, 1220, 1423, 1855
HinP1I GCGC 4 cut(s) 538, 1220, 1423, 1855
HincII GTYRAC 2 cut(s) 202, 366
HindII GTYRAC 2 cut(s) 202, 366
HindIII AAGCTT 2 cut(s) 839, 1825
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 6 cut(s) 531, 701, 755, 884, 2178, 2381
HphI GGTGA 2 cut(s) 58, 898
Hpy166II GTNNAC 6 cut(s) 66, 202, 366, 751, 1281, 1630
Hpy188III TCNNGA 9 cut(s) 329, 531, 1089, 1145, 1163, 1390, 1508, 1711, 2099
Hpy8I GTNNAC 6 cut(s) 66, 202, 366, 751, 1281, 1630
HpyAV CCTTC 7 cut(s) 1328, 1604, 1643, 1939, 1960, 2249, 2522
HpyCH4IV ACGT 3 cut(s) 210, 612, 2385
HpyCH4V TGCA 8 cut(s) 281, 401, 933, 1179, 1468, 2325, 2329, 2501
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 1348, 2377
HpyF3I CTNAG 3 cut(s) 722, 2399, 2427
HpySE526I ACGT 3 cut(s) 210, 612, 2385
HspAI GCGC 4 cut(s) 538, 1220, 1423, 1855
Kpn2I TCCGGA 1 cut(s) 530
KpnI GGTACC 1 cut(s) 701
KroI GCCGGC 1 cut(s) 2177
KroNI GCCGGC 1 cut(s) 2179
Ksp22I TGATCA 1 cut(s) 1057
KspAI GTTAAC 1 cut(s) 202
KspI CCGCGG 1 cut(s) 242
Kzo9I GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
LmnI GCTCC 3 cut(s) 331, 1005, 1537
Lsp1109I GCAGC 8 cut(s) 60, 293, 327, 385, 867, 1757, 1760, 2443
LweI GCATC 5 cut(s) 94, 819, 1178, 1710, 2312
MaeI CTAG 8 cut(s) 483, 1313, 1359, 1680, 1878, 1908, 2054, 2193
MaeII ACGT 3 cut(s) 210, 612, 2385
MaeIII GTNAC 9 cut(s) 78, 117, 485, 1064, 1256, 1363, 1794, 1973, 2314
MalI GATC 8 cut(s) 456, 573, 1059, 1299, 1530, 1730, 1763, 1848
MboI GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
MlyI GAGTC 1 cut(s) 2059
MmeI TCCRAC 1 cut(s) 1765
Mph1103I ATGCAT 2 cut(s) 2327, 2331
MroI TCCGGA 1 cut(s) 530
MroNI GCCGGC 1 cut(s) 2177
MseI TTAA 9 cut(s) 201, 545, 639, 837, 870, 1127, 1227, 1463, 1568
MslI CAYNNNNRTG 2 cut(s) 90, 1482
MspA1I CMGCKG 4 cut(s) 241, 398, 417, 581
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 6 cut(s) 531, 701, 755, 884, 2178, 2381
MspR9I CCNGG 3 cut(s) 556, 755, 756
MvaI CCWGG 1 cut(s) 556
MvnI CGCG 2 cut(s) 241, 1425
MwoI GCNNNNNNNGC 3 cut(s) 82, 1348, 2377
NaeI GCCGGC 1 cut(s) 2179
NciI CCSGG 2 cut(s) 755, 756
NcoI CCATGG 1 cut(s) 2109
NdeII GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
NgoMIV GCCGGC 1 cut(s) 2177
NheI GCTAGC 1 cut(s) 1358
NlaIV GGNNCC 3 cut(s) 381, 699, 882
NmuCI GTSAC 5 cut(s) 78, 117, 485, 1256, 1363
NsbI TGCGCA 1 cut(s) 1221
NsiI ATGCAT 2 cut(s) 2327, 2331
NspI RCATGY 2 cut(s) 915, 2329
NspV TTCGAA 1 cut(s) 168
PaeI GCATGC 1 cut(s) 2329
PagI TCATGA 1 cut(s) 1144
PciI ACATGT 1 cut(s) 911
PdiI GCCGGC 1 cut(s) 2179
PflMI CCANNNNNTGG 2 cut(s) 389, 581
PinAI ACCGGT 1 cut(s) 883
PkrI GCNGC 9 cut(s) 75, 161, 283, 317, 400, 857, 1772, 1775, 2433
PleI GAGTC 1 cut(s) 2058
PpsI GAGTC 1 cut(s) 2058
Ppu21I YACGTR 1 cut(s) 211
PscI ACATGT 1 cut(s) 911
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 554
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 3 cut(s) 381, 699, 882
PspPI GGNCC 3 cut(s) 1038, 1251, 1622
PstI CTGCAG 1 cut(s) 403
PstNI CAGNNNCTG 2 cut(s) 861, 1420
PvuII CAGCTG 2 cut(s) 398, 581
RsaI GTAC 5 cut(s) 209, 699, 828, 984, 2349
RsaNI GTAC 5 cut(s) 208, 698, 827, 983, 2348
RseI CAYNNNNRTG 2 cut(s) 90, 1482
SacII CCGCGG 1 cut(s) 242
SaqAI TTAA 9 cut(s) 201, 545, 639, 837, 870, 1127, 1227, 1463, 1568
SatI GCNGC 9 cut(s) 74, 160, 282, 316, 399, 856, 1771, 1774, 2432
Sau3AI GATC 8 cut(s) 454, 571, 1057, 1297, 1528, 1728, 1761, 1846
Sau96I GGNCC 3 cut(s) 1038, 1251, 1622
ScaI AGTACT 1 cut(s) 828
SchI GAGTC 1 cut(s) 2059
ScrFI CCNGG 3 cut(s) 556, 755, 756
SfaNI GCATC 5 cut(s) 94, 819, 1178, 1710, 2312
SfcI CTRYAG 3 cut(s) 399, 775, 2143
Sfr303I CCGCGG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 883
SgrBI CCGCGG 1 cut(s) 242
SinI GGWCC 2 cut(s) 1038, 1251
SmaI CCCGGG 1 cut(s) 756
SmiMI CAYNNNNRTG 2 cut(s) 90, 1482
SmlI CTYRAG 2 cut(s) 836, 1390
SmoI CTYRAG 2 cut(s) 836, 1390
SphI GCATGC 1 cut(s) 2329
SsiI CCGC 6 cut(s) 160, 239, 241, 417, 1425, 2291
SspI AATATT 3 cut(s) 373, 1891, 2491
SspMI CTAG 8 cut(s) 483, 1313, 1359, 1680, 1878, 1908, 2054, 2193
StyD4I CCNGG 3 cut(s) 554, 753, 754
StyI CCWWGG 2 cut(s) 294, 2109
TaiI ACGT 3 cut(s) 213, 615, 2388
TaqI TCGA 7 cut(s) 36, 168, 519, 647, 1155, 1845, 2526
TatI WGTACW 1 cut(s) 826
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 9 cut(s) 201, 545, 639, 837, 870, 1127, 1227, 1463, 1568
Tru9I TTAA 9 cut(s) 201, 545, 639, 837, 870, 1127, 1227, 1463, 1568
TscAI CASTG 3 cut(s) 95, 1261, 1372
TseFI GTSAC 5 cut(s) 78, 117, 485, 1256, 1363
TseI GCWGC 8 cut(s) 73, 281, 315, 398, 855, 1770, 1773, 2431
Tsp45I GTSAC 5 cut(s) 78, 117, 485, 1256, 1363
TspGWI ACGGA 4 cut(s) 105, 1026, 1335, 2235
TspMI CCCGGG 1 cut(s) 754
TspRI CASTG 3 cut(s) 95, 1261, 1372
Van91I CCANNNNNTGG 2 cut(s) 389, 581
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 2 cut(s) 1038, 1251
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 3 cut(s) 352, 515, 2007
XceI RCATGY 2 cut(s) 915, 2329
XmaI CCCGGG 1 cut(s) 754
XspI CTAG 8 cut(s) 483, 1313, 1359, 1680, 1878, 1908, 2054, 2193
ZrmI AGTACT 1 cut(s) 828
Zsp2I ATGCAT 2 cut(s) 2327, 2331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.