Rh5CG049600

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
3534366 .. 3536361
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG049600.1

Sequence Viewer

Length: 456 bp
ATGTTTCAGTCTTCAAGAGATGCTCTTCGACAATATATAGGAAAGCATGATCTATCAGAGCTATTGATCTATGATTTTGATGCCATATTAATAGCTACGAAAAATTTCAGCGACATAAACAAACTCGGGCAGGGTGGCTTTGGTCCAGTTTATAAGGCGTGGAACTTGTGGAATGAAGGCAGGGGACTAGAATTAGTTGATGAAGTATTGGGTGATTCATATTCCTCATCAGAAGTAATGAAATGCGCCTATATTGGGCTTCTTTGTGTACAGGACAGTGCTGTGGATAGGCCAACCATGGGGGATATAGTTTCGATGCTAAGTAGTGACACGGATGGTCCAAAACCTAAGGAGCCTGTATTCACTATTCAGAACTCATTCTCTCATCCTCAACCTCAATATGGAAATACTTACTCTACAAATGAAGCTACCATTTCAGTGATTGAAGGAAGATGA

Protein Analysis

151

Amino Acids

16.72

Weight (kDa)

4.6

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G11280 AT1G61370 AT1G61370 AT1G61380 AT1G61390 AT1G61390 AT1G61400 AT1G61400 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61420 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61430 AT1G61440 AT1G61440 AT1G61440 AT1G61460 AT1G61475 AT1G61480 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61490 AT1G61500 AT1G61500 AT1G61500 AT1G61550
fragaria_vesca FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_1g16211 FvH4_2g05942 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03431 FvH4_3g03432 FvH4_3g03433 FvH4_3g03434 FvH4_3g03450 FvH4_3g03451 FvH4_3g03460 FvH4_3g03461 FvH4_3g03481 FvH4_3g03482 FvH4_3g03501 FvH4_3g03502 FvH4_3g03520 FvH4_3g03521 FvH4_3g03560 FvH4_3g03560 FvH4_3g03581 FvH4_3g03581 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g31930 FvH4_5g32570
malus_domestica MD05G1329700.v1.1 MD05G1329900.v1.1 MD05G1330000.v1.1 MD05G1330100.v1.1 MD05G1330200.v1.1 MD05G1330400.v1.1 MD05G1330600.v1.1 MD05G1330700.v1.1 MD05G1330800.v1.1 MD05G1331000.v1.1 MD05G1331100.v1.1 MD05G1331200.v1.1 MD05G1331300.v1.1 MD05G1331400.v1.1 MD05G1331500.v1.1 MD05G1331600.v1.1 MD05G1331700.v1.1 MD10G1306700.v1.1 MD10G1306800.v1.1 MD10G1306900.v1.1 MD10G1307300.v1.1 MD10G1307500.v1.1 MD17G1248100.v1.1 MD17G1249300.v1.1 MD17G1249500.v1.1 MD17G1249800.v1.1
prunus_persica Prupe.4G032500_v2.0.a1 Prupe.4G032600_v2.0.a1 Prupe.4G032700_v2.0.a1 Prupe.4G032900_v2.0.a1 Prupe.4G033000_v2.0.a1
pyrus_communis pycom05g30280 pycom05g30290 pycom05g30300 pycom05g30310 pycom05g30330 pycom05g30360 pycom05g30380 pycom10g25890 pycom10g25910 pycom17g24930 pycom17g24940 pycom17g25000 pycom17g25060 pycom17g25350
rosa_chinensis RchiOBHm_Chr1g0319071 RchiOBHm_Chr1g0319131 RchiOBHm_Chr1g0319141 RchiOBHm_Chr1g0319161 RchiOBHm_Chr1g0319181 RchiOBHm_Chr1g0319221 RchiOBHm_Chr1g0319231 RchiOBHm_Chr1g0319241 RchiOBHm_Chr1g0319311 RchiOBHm_Chr1g0334421 RchiOBHm_Chr1g0337491 RchiOBHm_Chr1g0337661 RchiOBHm_Chr1g0337691 RchiOBHm_Chr1g0337791 RchiOBHm_Chr1g0352251 RchiOBHm_Chr2g0122431 RchiOBHm_Chr2g0160101 RchiOBHm_Chr3g0485161 RchiOBHm_Chr3g0485171 RchiOBHm_Chr4g0389441 RchiOBHm_Chr4g0389451 RchiOBHm_Chr4g0392601 RchiOBHm_Chr4g0393961 RchiOBHm_Chr4g0393991 RchiOBHm_Chr4g0394071 RchiOBHm_Chr4g0394091 RchiOBHm_Chr4g0394151 RchiOBHm_Chr4g0408281 RchiOBHm_Chr4g0408311 RchiOBHm_Chr4g0416941 RchiOBHm_Chr5g0005231 RchiOBHm_Chr5g0005241 RchiOBHm_Chr5g0005261 RchiOBHm_Chr5g0005291 RchiOBHm_Chr5g0005301 RchiOBHm_Chr5g0005311 RchiOBHm_Chr5g0005321 RchiOBHm_Chr5g0005331 RchiOBHm_Chr5g0005341 RchiOBHm_Chr5g0005351 RchiOBHm_Chr5g0005361 RchiOBHm_Chr5g0005371 RchiOBHm_Chr5g0005381 RchiOBHm_Chr5g0005391 RchiOBHm_Chr5g0005411 RchiOBHm_Chr5g0005421 RchiOBHm_Chr5g0005441 RchiOBHm_Chr5g0005451 RchiOBHm_Chr5g0005471 RchiOBHm_Chr5g0005521 RchiOBHm_Chr5g0005531 RchiOBHm_Chr5g0005541 RchiOBHm_Chr5g0005551 RchiOBHm_Chr5g0005571 RchiOBHm_Chr5g0005581 RchiOBHm_Chr5g0005631 RchiOBHm_Chr7g0211391 RchiOBHm_Chr7g0222041 RchiOBHm_Chr7g0222051 RchiOBHm_Chr7g0222061 RchiOBHm_Chr7g0222071 RchiOBHm_Chr7g0231441
rosa_laevigata RLG00000007941 RLG00000007942 RLG00000007943 RLG00000008271 RLG00000008656 RLG00000009719 RLG00000009722 RLG00000009981 RLG00000014698 RLG00000018673 RLG00000018675 RLG00000021197 RLG00000022560 RLG00000022561 RLG00000022562 RLG00000022563 RLG00000029269 RLG00000029456 RLG00000030495 RLG00000030497 RLG00000030499 RLG00000030501 RLG00000030505 RLG00000031302 RLG00000031304 RLG00000031305 RLG00000031306 RLG00000031308 RLG00000031309 RLG00000031310 RLG00000031313 RLG00000031343 RLG00000031344 RLG00000031386
rosa_multiflora Rmu_co8145070.1_g000001 Rmu_co8220846.1_g000001 Rmu_co8338791.1_g000001 Rmu_co8346441.1_g000001 Rmu_co8405641.1_g000001 Rmu_co8485383.1_g000001 Rmu_co8515907.1_g000001 Rmu_sc0000570.1_g000001 Rmu_sc0000570.1_g000008 Rmu_sc0000570.1_g000019 Rmu_sc0000570.1_g000020 Rmu_sc0000570.1_g000021 Rmu_sc0000942.1_g000001 Rmu_sc0000942.1_g000029 Rmu_sc0001199.1_g000004 Rmu_sc0001199.1_g000005 Rmu_sc0001199.1_g000006 Rmu_sc0001199.1_g000007 Rmu_sc0001199.1_g000008 Rmu_sc0001199.1_g000009 Rmu_sc0001543.1_g000005 Rmu_sc0002023.1_g000008 Rmu_sc0002498.1_g000016 Rmu_sc0002539.1_g000034 Rmu_sc0002772.1_g000013 Rmu_sc0002786.1_g000018 Rmu_sc0003301.1_g000009 Rmu_sc0003338.1_g000007 Rmu_sc0003338.1_g000011 Rmu_sc0003428.1_g000003 Rmu_sc0003574.1_g000001 Rmu_sc0003574.1_g000008 Rmu_sc0003832.1_g000025 Rmu_sc0004149.1_g000004 Rmu_sc0004553.1_g000006 Rmu_sc0004950.1_g000008 Rmu_sc0005072.1_g000017 Rmu_sc0006085.1_g000002 Rmu_sc0006981.1_g000007 Rmu_sc0009469.1_g000003 Rmu_sc0010358.1_g000001 Rmu_sc0014528.1_g000003 Rmu_sc0014528.1_g000005 Rmu_sc0014528.1_g000006 Rmu_sc0018903.1_g000009 Rmu_sc0021494.1_g000001 Rmu_sc0022096.1_g000001 Rmu_sc0025170.1_g000001 Rmu_sc0025170.1_g000002 Rmu_sc0025170.1_g000003 Rmu_sc0025818.1_g000001 Rmu_sc0026277.1_g000001 Rmu_sc0034649.1_g000001 Rmu_sc0036724.1_g000001 Rmu_sc0039163.1_g000001
rosa_roxburghii Rroxscaffold_1G00070200 Rroxscaffold_1G00070210 Rroxscaffold_1G00070260 Rroxscaffold_1G00070270 Rroxscaffold_1G00070280 Rroxscaffold_1G00070290 Rroxscaffold_1G00070300 Rroxscaffold_1G00070320 Rroxscaffold_1G00070340 Rroxscaffold_1G00070350 Rroxscaffold_1G00070360 Rroxscaffold_1G00070370 Rroxscaffold_1G00070380 Rroxscaffold_1G00070390 Rroxscaffold_1G00070410 Rroxscaffold_1G00070420 Rroxscaffold_1G00070440 Rroxscaffold_2G00090040 Rroxscaffold_2G00121670 Rroxscaffold_2G00121720 Rroxscaffold_3G00229310 Rroxscaffold_4G00314020 Rroxscaffold_4G00314180 Rroxscaffold_4G00328590 Rroxscaffold_4G00328600 Rroxscaffold_4G00328610 Rroxscaffold_4G00328630 Rroxscaffold_4G00328660 Rroxscaffold_5G00335450 Rroxscaffold_5G00339060 Rroxscaffold_5G00339150 Rroxscaffold_5G00352800 Rroxscaffold_5G00352850 Rroxscaffold_5G00356810 Rroxscaffold_5G00360770 Rroxscaffold_5G00360790 Rroxscaffold_6G00389560 Rroxscaffold_6G00389570 Rroxscaffold_7G00208730
rosa_rugosa Rorug01G0026700 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0026800 Rorug01G0135800.1 Rorug01G0215700 Rorug01G0215800 Rorug02G0237600 Rorug03G0200000 Rorug03G0201000 Rorug03G0201000 Rorug03G0216500 Rorug03G0216600 Rorug03G0216700 Rorug03G0323200 Rorug03G0323300 Rorug03G0369600.1 Rorug04G0085100 Rorug04G0114900 Rorug04G0114900 Rorug04G0115000 Rorug04G0145500 Rorug04G0416300 Rorug04G0416400 Rorug04G0416500 Rorug04G0416500 Rorug04G0416600 Rorug04G0416700 Rorug04G0416800 Rorug04G0416900 Rorug04G0416900 Rorug05G0144400 Rorug05G0144500 Rorug05G0572000 Rorug05G0572400 Rorug07G0266600
rosa_samantha Rh1BG009800 Rh1BG026600 Rh1BG034900 Rh1BG035000 Rh1BG035100 Rh1BG035700 Rh1BG037200 Rh1BG105100 Rh1BG124400 Rh1BG211400 Rh1CG037700 Rh1CG037800 Rh2CG283600 Rh2CG284000 Rh2CG530500 Rh2DG320800 Rh3AG266400 Rh3DG296100 Rh3DG296200 Rh3DG296300 Rh3DG362500 Rh3DG362700 Rh4BG020700 Rh4BG020900 Rh4BG046500 Rh4BG046600 Rh4BG047300 Rh4BG146800 Rh4BG146900 Rh4BG173900 Rh5AG043300 Rh5AG043800 Rh5AG043900 Rh5AG044100 Rh5AG044200 Rh5CG048900 Rh5CG049100 Rh5CG049300 Rh5CG049400 Rh5CG049600 Rh5CG049800 Rh5CG049900 Rh5CG050000 Rh5CG050100 Rh5CG050200 Rh5CG050400 Rh5CG050500 Rh5CG050600 Rh5CG050700 Rh5CG050800 Rh5CG050900 Rh5CG051000 Rh5CG051100 Rh5CG051200 Rh5CG051300 Rh5CG051600 Rh5CG051800 Rh7BG395400
rosa_wichuraiana Rw0G000430 Rw0G000480 Rw1G003030 Rw1G003070 Rw1G003080 Rw1G003100 Rw1G003110 Rw1G003270 Rw1G012730 Rw1G012760 Rw2G023620 Rw2G045230 Rw3G023770 Rw3G026730 Rw3G028610 Rw4G004000 Rw4G012230 Rw4G014640 Rw4G018320 Rw5G004220 Rw5G004230 Rw5G004240 Rw5G004250 Rw5G004260 Rw5G004270 Rw5G004280 Rw5G004290 Rw5G004300 Rw5G004320 Rw5G004330 Rw5G004340 Rw5G004350 Rw5G004380 Rw5G004400 Rw5G004410 Rw5G004420 Rw5G004430 Rw5G004440 Rw5G004450 Rw5G004460 Rw6G007850 Rw7G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 255, 299, 401
AgsI TTSAA 2 cut(s) 15, 446
AluBI AGCT 3 cut(s) 61, 95, 428
AluI AGCT 3 cut(s) 61, 95, 428
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 103
AseI ATTAAT 1 cut(s) 89
Asp700I GAANNNNTTC 2 cut(s) 104, 377
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 143, 338
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 143, 338
AxyI CCTNAGG 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 3
BccI CCATC 1 cut(s) 329
BfaI CTAG 1 cut(s) 188
Bme18I GGWCC 2 cut(s) 143, 338
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 143, 338
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 3 cut(s) 10, 70, 306
BpiI GAAGAC 1 cut(s) 3
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 299, 401
Bse1I ACTGG 1 cut(s) 146
Bse21I CCTNAGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 340, 385
BseLI CCNNNNNNNGG 3 cut(s) 255, 299, 401
BseNI ACTGG 1 cut(s) 146
BshFI GGCC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 255, 299, 401
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 49, 66
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 49, 66
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 320, 348
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 340, 385
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 52, 69
BstMBI GATC 2 cut(s) 49, 66
BstV2I GAAGAC 1 cut(s) 3
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 340, 385
BtsIMutI CAGTG 2 cut(s) 283, 444
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 143, 338
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 47, 298
CviJI RGCY 7 cut(s) 61, 95, 138, 259, 292, 355, 428
CviKI_1 RGCY 7 cut(s) 61, 95, 138, 259, 292, 355, 428
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 2 cut(s) 320, 348
DpnI GATC 2 cut(s) 51, 68
DpnII GATC 2 cut(s) 49, 66
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 143, 338
Eco81I CCTNAGG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 50, 301
FaqI GGGAC 1 cut(s) 198
FatI CATG 2 cut(s) 46, 297
FokI GGATG 2 cut(s) 347, 372
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 50, 301
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 58, 232, 372
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 170, 440
HpyCH4III ACNGT 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 320, 348
Hsp92II CATG 2 cut(s) 50, 301
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 49, 66
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 116, 159, 166, 257, 369
LweI GCATC 3 cut(s) 10, 70, 306
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 51, 68
MboI GATC 2 cut(s) 49, 66
MboII GAAGA 2 cut(s) 3, 17
MluCI AATT 2 cut(s) 103, 191
MnlI CCTC 3 cut(s) 235, 399, 405
MroXI GAANNNNTTC 2 cut(s) 104, 377
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 297
NdeII GATC 2 cut(s) 49, 66
NlaIII CATG 2 cut(s) 50, 301
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 104, 377
PfeI GAWTC 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 89
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 143, 338
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 2 cut(s) 49, 66
Sau96I GGNCC 2 cut(s) 143, 338
SetI ASST 5 cut(s) 63, 97, 349, 397, 430
SfaNI GCATC 3 cut(s) 10, 70, 306
SinI GGWCC 2 cut(s) 143, 338
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 2 cut(s) 103, 191
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 28, 314
TasI AATT 2 cut(s) 103, 191
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 2 cut(s) 283, 444
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 5 cut(s) 189, 207, 216, 254, 438
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 2 cut(s) 283, 444
VpaK11BI GGWCC 2 cut(s) 143, 338
VspI ATTAAT 1 cut(s) 89
XapI RAATTY 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 104, 377
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.