Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

17656392 .. 17659787

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTGTTGTGGAGATCGGAGAGGAGAGAGGGCGGCATGGCGAGTAGAGTAGACCACGAATACGACTACCTGTTCAAGATCGTGTTGATCGGTGACTCTGGTGTGGGCAAATCTAACATTCTCTCTAGATTTATCAGGAATGAGTTCTGCTTGGAGTCCAAATCCACTATCGGAGTCGAGTTCGCCACCGAACTCTCCAGGCAACTATATGAATGTGGTTTTGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

77

Amino Acids

8.78

Weight (kDa)

6.56

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	26 - 64	4.5e-11	Ras family
Roc	PF08477	26 - 64	1.4e-10	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	14, 78, 87
BspACI	CCGC	1 cut(s)	33
BssMI	GATC	3 cut(s)	14, 78, 87
Bst2UI	CCWGG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	17, 81, 90
BstMBI	GATC	3 cut(s)	14, 78, 87
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
CviAII	CATG	1 cut(s)	37
DpnI	GATC	3 cut(s)	16, 80, 89
DpnII	GATC	3 cut(s)	14, 78, 87
EcoRII	CCWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 208, 210
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	3 cut(s)	95, 155, 174
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	19, 173
Hpy188III	TCNNGA	3 cut(s)	76, 126, 136
Hpy8I	GTNNAC	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	14, 78, 87
LpnPI	CCDG	5 cut(s)	83, 84, 121, 184, 211
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	3 cut(s)	16, 80, 89
MboI	GATC	3 cut(s)	14, 78, 87
MlyI	GAGTC	3 cut(s)	89, 164, 183
MnlI	CCTC	2 cut(s)	15, 22
MroXI	GAANNNNTTC	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	14, 78, 87
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	3 cut(s)	89, 163, 182
PpsI	GAGTC	3 cut(s)	89, 163, 182
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	3 cut(s)	14, 78, 87
SchI	GAGTC	3 cut(s)	89, 164, 183
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	1 cut(s)	72
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	197
TaqI	TCGA	1 cut(s)	177
TauI	GCSGC	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.