Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002354.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

21524 .. 23765

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002354.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggcgatttggttgtatcccaagaaggtgtccatgaagaaactcaggagcttgtgtttgactgtggaatcgaccaattggtcaattcgtggaaaaggaaagctatccttggggcaagctttgttcaagttgcggtctggctctaaagatgatccctctccaaagctaaaccccactctccccccacaaaattccaaaacccctccactacctctcccaagcccacttcgagaccaagaaacccagacccaatttgcggacgatgaagccggaggcgaggagtacttgttcaaggtggtcctcatcggcgactccaccgtcggcaagtcaaacctgctctcgcacttcgctaggaacgagtttgatcaaaactccaaggccacaattggggtcgagtttcggacccaggccatggaaattgacggcaaagaggtcaaggcccagatctgggacatggcgggacaagagcgcttccaggctgtcacgtcggcttactacttaggcgcggtgggcgcgcttgtagtgtatgatattaataggaagaccacttttgagagtgtggagcgctggcttaatgagcttaccagtaagttttttgggtacccttttgttgttgttgcttgtttaaacgatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

8.44

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	79, 317
Acc36I	ACCTGC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	2 cut(s)	506, 515
AciI	CCGC	4 cut(s)	133, 257, 458, 506
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	2 cut(s)	284, 602
AfeI	AGCGCT	2 cut(s)	470, 566
AfiI	CCNNNNNNNGG	5 cut(s)	256, 387, 412, 447, 448
AgsI	TTSAA	2 cut(s)	127, 292
AjiI	CACGTC	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	405, 474
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	5 cut(s)	51, 103, 119, 166, 580
AluI	AGCT	5 cut(s)	51, 103, 119, 166, 580
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	146
Aor51HI	AGCGCT	2 cut(s)	470, 566
AoxI	GGCC	3 cut(s)	378, 408, 438
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	534
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	5 cut(s)	471, 506, 515, 517, 567
AspS9I	GGNCC	3 cut(s)	298, 402, 439
AvaII	GGWCC	2 cut(s)	298, 402
BanI	GGYRCC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	2 cut(s)	407, 476
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	472, 568
BfuAI	ACCTGC	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	444
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	407, 476
Bme18I	GGWCC	2 cut(s)	298, 402
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	298, 402, 439
BmiI	GGNNCC	2 cut(s)	404, 602
BmrFI	CCNGG	2 cut(s)	407, 476
BpiI	GAAGAC	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	108, 375, 405, 411
BsaXI	ACNNNNNCTCC	6 cut(s)	40, 70, 198, 228, 272, 302
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 387, 412, 447, 448
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	407, 476
BseDI	CCNNGG	4 cut(s)	108, 375, 405, 411
BseLI	CCNNNNNNNGG	5 cut(s)	256, 387, 412, 447, 448
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	585
BsePI	GCGCGC	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	506, 515
BshFI	GGCC	3 cut(s)	380, 410, 440
BshNI	GGYRCC	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	464, 474
BslI	CCNNNNNNNGG	5 cut(s)	256, 387, 412, 447, 448
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	464, 474
BsnI	GGCC	3 cut(s)	380, 410, 440
Bso31I	GGTCTC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	151, 364, 444
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	4 cut(s)	133, 257, 458, 506
BspANI	GGCC	3 cut(s)	380, 410, 440
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	506, 515
BspLI	GGNNCC	2 cut(s)	404, 602
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	108, 375, 405, 411
BssHII	GCGCGC	1 cut(s)	513
BssMI	GATC	3 cut(s)	151, 364, 444
BssT1I	CCWWGG	3 cut(s)	108, 375, 411
Bst2UI	CCWGG	2 cut(s)	407, 476
Bst4CI	ACNGT	2 cut(s)	64, 319
BstC8I	GCNNGC	3 cut(s)	117, 515, 569
BstDEI	CTNAG	2 cut(s)	44, 499
BstDSI	CCRYGG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	506, 515
BstH2I	RGCGCY	2 cut(s)	472, 568
BstHHI	GCGC	5 cut(s)	471, 506, 515, 517, 567
BstKTI	GATC	3 cut(s)	154, 367, 447
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	3 cut(s)	151, 364, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	510, 512, 577
BstNI	CCWGG	2 cut(s)	407, 476
BstSCI	CCNGG	2 cut(s)	405, 474
BstUI	CGCG	2 cut(s)	506, 515
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	380, 410, 440
BtgI	CCRYGG	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	117, 515, 569
CfoI	GCGC	5 cut(s)	471, 506, 515, 517, 567
Cfr13I	GGNCC	3 cut(s)	298, 402, 439
Csp6I	GTAC	2 cut(s)	283, 601
CviAII	CATG	3 cut(s)	34, 412, 454
CviQI	GTAC	2 cut(s)	283, 601
DdeI	CTNAG	2 cut(s)	44, 499
DpnI	GATC	3 cut(s)	153, 366, 446
DpnII	GATC	3 cut(s)	151, 364, 444
DraI	TTTAAA	1 cut(s)	627
DrdI	GACNNNNNNGTC	2 cut(s)	79, 317
DseDI	GACNNNNNNGTC	2 cut(s)	79, 317
Eco130I	CCWWGG	3 cut(s)	108, 375, 411
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	298, 402
Eco47III	AGCGCT	2 cut(s)	470, 566
EcoRII	CCWGG	2 cut(s)	405, 474
EcoT14I	CCWWGG	3 cut(s)	108, 375, 411
ErhI	CCWWGG	3 cut(s)	108, 375, 411
FaeI	CATG	3 cut(s)	37, 415, 457
FaiI	YATR	4 cut(s)	35, 413, 455, 528
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	464, 474
FatI	CATG	3 cut(s)	33, 411, 453
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	364
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	5 cut(s)	470, 505, 514, 516, 566
HaeII	RGCGCY	2 cut(s)	472, 568
HaeIII	GGCC	3 cut(s)	380, 410, 440
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	5 cut(s)	471, 506, 515, 517, 567
Hin1II	CATG	3 cut(s)	37, 415, 457
Hin6I	GCGC	5 cut(s)	469, 504, 513, 515, 565
HinP1I	GCGC	5 cut(s)	469, 504, 513, 515, 565
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	2 cut(s)	68, 311
HpaII	CCGG	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	2 cut(s)	46, 230
Hpy99I	CGWCG	2 cut(s)	323, 490
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	64, 319
HpyCH4IV	ACGT	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	510, 512, 577
HpyF3I	CTNAG	2 cut(s)	44, 499
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	37, 415, 457
HspAI	GCGC	5 cut(s)	469, 504, 513, 515, 565
KpnI	GGTACC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	151, 364, 444
LmnI	GCTCC	2 cut(s)	48, 562
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	153, 366, 446
MboI	GATC	3 cut(s)	151, 364, 444
MboII	GAAGA	2 cut(s)	49, 553
MfeI	CAATTG	2 cut(s)	76, 384
MflI	RGATCY	1 cut(s)	444
MluCI	AATT	6 cut(s)	76, 84, 190, 251, 384, 417
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	7 cut(s)	166, 213, 222, 266, 271, 311, 424
MseI	TTAA	3 cut(s)	534, 573, 626
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	407, 476
MssI	GTTTAAAC	1 cut(s)	627
MunI	CAATTG	2 cut(s)	76, 384
MvaI	CCWGG	2 cut(s)	407, 476
MvnI	CGCG	2 cut(s)	506, 515
MwoI	GCNNNNNNNGC	3 cut(s)	510, 512, 577
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	151, 364, 444
NlaIII	CATG	3 cut(s)	37, 415, 457
NlaIV	GGNNCC	2 cut(s)	404, 602
NmuCI	GTSAC	1 cut(s)	481
PauI	GCGCGC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	412
PleI	GAGTC	1 cut(s)	305
PmeI	GTTTAAAC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	405, 474
PspGI	CCWGG	2 cut(s)	405, 474
PspN4I	GGNNCC	2 cut(s)	404, 602
PspPI	GGNCC	3 cut(s)	298, 402, 439
PsuI	RGATCY	1 cut(s)	444
PteI	GCGCGC	1 cut(s)	513
RsaI	GTAC	2 cut(s)	284, 602
RsaNI	GTAC	2 cut(s)	283, 601
SaqAI	TTAA	3 cut(s)	534, 573, 626
Sau3AI	GATC	3 cut(s)	151, 364, 444
Sau96I	GGNCC	3 cut(s)	298, 402, 439
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	407, 476
SinI	GGWCC	2 cut(s)	298, 402
Sse9I	AATT	6 cut(s)	76, 84, 190, 251, 384, 417
SsiI	CCGC	4 cut(s)	133, 257, 458, 506
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	405, 474
StyI	CCWWGG	3 cut(s)	108, 375, 411
TaaI	ACNGT	2 cut(s)	64, 319
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	71, 229, 393
TasI	AATT	6 cut(s)	76, 84, 190, 251, 384, 417
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	534, 573, 626
Tru9I	TTAA	3 cut(s)	534, 573, 626
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	50, 279
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	298, 402
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.