Rh5DG332600

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001046
Physical Location & Seq
Forward (+)
43866593 .. 43866844
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG332600.1

Sequence Viewer

Length: 252 bp
ATGAGCACTGATTCTCCTGCGACGACGACAAGGCCCGCAACCACTTCATCTCCAACCGGAAAGTCGCTCCAGCTCTTCGACACGGCCTACAGGTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCCGGTATCGGCAAATCCGATTTGTTGTCCAGGTTCATGCGCAATGAGTTCAACCTCGAGTCTAAGTCCACCATAGGTGTCGAGTTTGCCACCCGGAGCACCCTTGTCGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

83

Amino Acids

9.12

Weight (kDa)

6.05

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 39 - 82 1.4e-10 Ras family
Roc PF08477 39 - 78 1.7e-09 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 115, 187
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 2 cut(s) 8, 236
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 32, 84, 130
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 191
Bbv12I GWGCWC 2 cut(s) 8, 236
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 166, 229
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 166, 229
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 3 cut(s) 28, 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 184
BshFI GGCC 3 cut(s) 34, 86, 132
BsiHKAI GWGCWC 2 cut(s) 8, 236
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 3 cut(s) 57, 138, 229
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 3 cut(s) 34, 86, 132
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 8, 236
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 36
BspANI GGCC 3 cut(s) 34, 86, 132
BspQI GCTCTTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 164, 227
BstSFI CTRYAG 1 cut(s) 88
BsuRI GGCC 3 cut(s) 34, 86, 132
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 134, 172
CviJI RGCY 4 cut(s) 34, 73, 86, 132
CviKI_1 RGCY 4 cut(s) 34, 73, 86, 132
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 137, 175
FaiI YATR 3 cut(s) 135, 173, 209
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 133, 171
FauI CCCGC 1 cut(s) 43
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 3 cut(s) 34, 86, 132
HapII CCGG 3 cut(s) 57, 138, 229
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 137, 175
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 2 cut(s) 11, 194
HpaII CCGG 3 cut(s) 57, 138, 229
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 97, 154
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 25, 28
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 137, 175
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 72, 231
LpnPI CCDG 8 cut(s) 30, 70, 76, 83, 151, 151, 178, 242
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 8, 236
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 1 cut(s) 200
MspI CCGG 3 cut(s) 57, 138, 229
MspR9I CCNGG 2 cut(s) 166, 229
MvaI CCWGG 1 cut(s) 166
NciI CCSGG 1 cut(s) 229
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 137, 175
NsbI TGCGCA 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 166, 229
SduI GDGCHC 2 cut(s) 8, 236
SetI ASST 6 cut(s) 75, 95, 120, 170, 192, 214
SfcI CTRYAG 1 cut(s) 88
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 164, 227
TaqI TCGA 4 cut(s) 78, 192, 216, 243
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 36, 160
TspRI CASTG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.