RLG00000034798

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001046
Physical Location & Seq
Reverse (-)
54719817 .. 54722079
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034798

Sequence Viewer

Length: 570 bp
ATGAGGGTTTCGCTCGAGGAAAGCGGCATACCGAAAGAAGAAAGGTTGGGGCTGGGGTCACATTTCGACCAGACTTTGGGTGGGCTTGAGTTAAGGTTCCTACTCAGCTACTCTCTGGCTCTCTGCGACTGCGACTCAGCTCTCTGGGTCTTCGGTCTTCTACTCTTCCTCACCTCTGCGGCTCTGCGGCTCTGCCTCTCAGCTCTCAGCTCTCATAATCGGTCTACGTCTCTGCCTCCCAGGTACACCAAGGTGGTCTTGATTGGCGACTCCGGCGTTGGTAAGTCCAATCTCCTCTCCAGGTTCACTAAGAACGAGTTCAACCGCGAGTCCAAGTCCACCATTACTGTCGAGTTCGCTGGCCAAATCGGTCATCAAGGCCTAGATTTGGGACATTGCTGGCCAAGAAAGGTCAGCTTTCTGAATATTAACGATTTATGGGACTCCCCTTTGGGTGCCTTCCCAAAGCTACAGGTCTGCAAAACATACACACAACAGAGCAAGAGGCAATGTCACAGAGTGAGTGCCAGTGAGGTGTTAGCGCTTGGAACTTTGACGTTGAGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000212 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000922 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005768 GO:0005794 GO:0005802 GO:0005819 GO:0005856 GO:0005933 GO:0005935 GO:0005938 GO:0006810 GO:0006886 GO:0006887 GO:0006996 GO:0007010 GO:0007017 GO:0007033 GO:0007049 GO:0007051 GO:0007107 GO:0007154 GO:0007165 GO:0007264 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010720 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019867 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030427 GO:0031023 GO:0031090 GO:0031410 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031982 GO:0031984 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0032940 GO:0033036 GO:0033365 GO:0034306 GO:0034307 GO:0034498 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0042144 GO:0042147 GO:0042173 GO:0042763 GO:0042764 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043937 GO:0043938 GO:0043940 GO:0043941 GO:0044087 GO:0044089 GO:0044380 GO:0044422 GO:0044424 GO:0044429 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0045595 GO:0045597 GO:0045787 GO:0045881 GO:0045921 GO:0046903 GO:0046907 GO:0048193 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051300 GO:0051301 GO:0051321 GO:0051445 GO:0051446 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055037 GO:0060284 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061796 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071988 GO:0072687 GO:0072697 GO:0072698 GO:0075296 GO:0090068 GO:0090619 GO:0090726 GO:0097159 GO:0097367 GO:0097576 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099568 GO:1901265 GO:1901363 GO:1902410 GO:1902441 GO:1903023 GO:1903024 GO:1903046 GO:1903047 GO:1903530 GO:1903532 GO:1905508 GO:1990151 GO:1990395 GO:1990778 GO:1990896 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

190

Amino Acids

20.91

Weight (kDa)

8.98

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 84 - 120 1.2e-10 Ras family
Roc PF08477 84 - 121 9e-10 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 1 cut(s) 224
AccII CGCG 1 cut(s) 327
AciI CCGC 4 cut(s) 24, 179, 187, 325
AcoI YGGCCR 2 cut(s) 361, 401
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 76, 388
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 2 cut(s) 239, 299
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 6 cut(s) 108, 140, 203, 210, 417, 469
AluI AGCT 6 cut(s) 108, 140, 203, 210, 417, 469
Alw26I GTCTC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 543
AoxI GGCC 3 cut(s) 361, 379, 401
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 14
BalI TGGCCA 2 cut(s) 363, 403
BanI GGYRCC 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 142, 149
BciT130I CCWGG 2 cut(s) 241, 301
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 3 cut(s) 25, 180, 188
BlsI GCNGC 3 cut(s) 26, 181, 189
Bme1390I CCNGG 2 cut(s) 241, 301
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 98, 457
BmrFI CCNGG 2 cut(s) 241, 301
BpiI GAAGAC 2 cut(s) 142, 149
BpmI CTGGAG 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 239, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 388
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 2 cut(s) 394, 515
BseBI CCWGG 2 cut(s) 241, 301
BseDI CCNNGG 2 cut(s) 239, 249
BseLI CCNNNNNNNGG 2 cut(s) 76, 388
BseMI GCAATG 2 cut(s) 394, 515
BseMII CTCAG 4 cut(s) 118, 150, 213, 220
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 363, 381, 403
BshNI GGYRCC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 405, 455
BslI CCNNNNNNNGG 2 cut(s) 76, 388
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 405, 455
BsnI GGCC 3 cut(s) 363, 381, 403
BsoBI CYCGRG 1 cut(s) 14
BspACI CCGC 4 cut(s) 24, 179, 187, 325
BspANI GGCC 3 cut(s) 363, 381, 403
BspCNI CTCAG 4 cut(s) 117, 149, 212, 219
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 98, 457
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 394, 515
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 2 cut(s) 239, 249
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 241, 301
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 361, 401
BstDEI CTNAG 5 cut(s) 104, 136, 199, 206, 309
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstMAI GTCTC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 241, 301
BstSCI CCNGG 2 cut(s) 239, 299
BstSFI CTRYAG 1 cut(s) 470
BstUI CGCG 1 cut(s) 327
BstV2I GAAGAC 2 cut(s) 142, 149
BsuRI GGCC 3 cut(s) 363, 381, 403
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 2 cut(s) 361, 401
CfoI GCGC 1 cut(s) 544
Csp6I GTAC 1 cut(s) 244
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 5 cut(s) 104, 136, 199, 206, 309
DraIII CACNNNGTG 1 cut(s) 520
EaeI YGGCCR 2 cut(s) 361, 401
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 381
Eco47III AGCGCT 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 239, 299
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 234
FaiI YATR 4 cut(s) 29, 216, 439, 487
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 401, 433
FaqI GGGAC 2 cut(s) 405, 455
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 3 cut(s) 25, 180, 188
Fsp4HI GCNGC 3 cut(s) 25, 180, 188
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 543
GluI GCNGC 3 cut(s) 25, 180, 188
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 3 cut(s) 363, 381, 403
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 544
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HinfI GANTC 4 cut(s) 134, 269, 329, 443
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 4 cut(s) 225, 246, 306, 339
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 4 cut(s) 225, 246, 306, 339
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 227, 557
HpyCH4V TGCA 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 5 cut(s) 104, 136, 199, 206, 309
HpySE526I ACGT 2 cut(s) 227, 557
HspAI GCGC 1 cut(s) 542
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 227, 557
MaeIII GTNAC 2 cut(s) 57, 512
MboII GAAGA 4 cut(s) 50, 142, 149, 157
MlsI TGGCCA 2 cut(s) 363, 403
MluNI TGGCCA 2 cut(s) 363, 403
MlyI GAGTC 4 cut(s) 128, 263, 338, 437
MnlI CCTC 9 cut(s) 10, 179, 184, 206, 246, 305, 498, 526, 555
Mox20I TGGCCA 2 cut(s) 363, 403
MroXI GAANNNNTTC 1 cut(s) 317
MscI TGGCCA 2 cut(s) 363, 403
MseI TTAA 3 cut(s) 92, 429, 568
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 2 cut(s) 363, 403
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 241, 301
MvaI CCWGG 2 cut(s) 241, 301
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 273
NlaIV GGNNCC 2 cut(s) 98, 457
NmuCI GTSAC 2 cut(s) 57, 512
OliI CACNNNNGTG 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 14
PceI AGGCCT 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 3 cut(s) 26, 181, 189
PleI GAGTC 4 cut(s) 128, 263, 337, 437
PpsI GAGTC 4 cut(s) 128, 263, 337, 437
Psp6I CCWGG 2 cut(s) 239, 299
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 239, 299
PspN4I GGNNCC 2 cut(s) 98, 457
PspXI VCTCGAGB 1 cut(s) 14
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 3 cut(s) 92, 429, 568
SatI GCNGC 3 cut(s) 25, 180, 188
SchI GAGTC 4 cut(s) 128, 263, 338, 437
ScrFI CCNGG 2 cut(s) 241, 301
SfcI CTRYAG 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 14, 86
SmoI CTYRAG 2 cut(s) 14, 86
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 4 cut(s) 24, 179, 187, 325
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 383
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 239, 299
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 230, 560
TaqI TCGA 3 cut(s) 15, 66, 351
TaqII GACCGA 3 cut(s) 143, 210, 359
TauI GCSGC 3 cut(s) 27, 182, 190
Tru1I TTAA 3 cut(s) 92, 429, 568
Tru9I TTAA 3 cut(s) 92, 429, 568
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 2 cut(s) 57, 512
Tsp45I GTSAC 2 cut(s) 57, 512
TspRI CASTG 1 cut(s) 535
Van91I CCANNNNNTGG 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.