Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041935.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1033

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

gtggtcctcatcggcgactccgccgtcggtaagtcaaacctgctctcgcacttcactaggaacgagtttgatcaaaactccaaggccacaattggggtcgagtttccgacccaggccatggaaatcgacggcaaagaggtcaaggcccagatctgggacatggcgggacaagagcggttccaggctgtcacgtcggcttactacttaggcgcggtgggctcgcttgtagtgtatgatattagtaggaagaccacttttgcgagtgtggagcgctggcttaatgagcttaccagtaagttttttgggtacccttttgttgttgttgcttatttaaacggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

114

Amino Acids

12.65

Weight (kDa)

5.29

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	48
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	175
AccII	CGCG	1 cut(s)	212
AciI	CCGC	4 cut(s)	21, 164, 175, 212
AfaI	GTAC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	4 cut(s)	93, 118, 153, 154
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	111, 180
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	3 cut(s)	84, 114, 144
Asp718I	GGTACC	1 cut(s)	306
AspLEI	GCGC	2 cut(s)	212, 273
AspS9I	GGNCC	2 cut(s)	4, 145
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	8, 145
BciT130I	CCWGG	2 cut(s)	113, 182
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	113, 182
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	4, 145
BmiI	GGNNCC	2 cut(s)	179, 308
BmrFI	CCNGG	2 cut(s)	113, 182
BpiI	GAAGAC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	81, 111, 117
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 118, 153, 154
Bse1I	ACTGG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	113, 182
BseDI	CCNNGG	3 cut(s)	81, 111, 117
BseLI	CCNNNNNNNGG	4 cut(s)	93, 118, 153, 154
BseNI	ACTGG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	86, 116, 146
BshNI	GGYRCC	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	170, 180
BslI	CCNNNNNNNGG	4 cut(s)	93, 118, 153, 154
BsmFI	GGGAC	2 cut(s)	170, 180
BsnI	GGCC	3 cut(s)	86, 116, 146
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	70, 150
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	21, 164, 175, 212
BspANI	GGCC	3 cut(s)	86, 116, 146
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	179, 308
BspMI	ACCTGC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	81, 111, 117
BssMI	GATC	2 cut(s)	70, 150
BssT1I	CCWWGG	2 cut(s)	81, 117
Bst2UI	CCWGG	2 cut(s)	113, 182
Bst4CI	ACNGT	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	221, 275
BstDEI	CTNAG	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	212, 273
BstKTI	GATC	2 cut(s)	73, 153
BstMBI	GATC	2 cut(s)	70, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 283
BstNI	CCWGG	2 cut(s)	113, 182
BstSCI	CCNGG	2 cut(s)	111, 180
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	86, 116, 146
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	221, 275
CfoI	GCGC	2 cut(s)	212, 273
Cfr13I	GGNCC	2 cut(s)	4, 145
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	2 cut(s)	118, 160
CviJI	RGCY	8 cut(s)	86, 116, 146, 185, 197, 219, 277, 286
CviKI_1	RGCY	8 cut(s)	86, 116, 146, 185, 197, 219, 277, 286
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	2 cut(s)	72, 152
DpnII	GATC	2 cut(s)	70, 150
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	81, 117
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	111, 180
EcoT14I	CCWWGG	2 cut(s)	81, 117
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	2 cut(s)	81, 117
FaeI	CATG	2 cut(s)	121, 163
FaiI	YATR	3 cut(s)	119, 161, 234
FaqI	GGGAC	2 cut(s)	170, 180
FatI	CATG	2 cut(s)	117, 159
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	2 cut(s)	211, 272
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	86, 116, 146
HhaI	GCGC	2 cut(s)	212, 273
Hin1II	CATG	2 cut(s)	121, 163
Hin6I	GCGC	2 cut(s)	210, 271
HinP1I	GCGC	2 cut(s)	210, 271
HinfI	GANTC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	108
Hpy99I	CGWCG	3 cut(s)	29, 131, 196
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 283
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	121, 163
HspAI	GCGC	2 cut(s)	210, 271
KpnI	GGTACC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 150
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	53, 98, 125, 139, 161, 167, 194, 259, 304
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	72, 152
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	2 cut(s)	70, 150
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	2 cut(s)	17, 130
MseI	TTAA	2 cut(s)	279, 332
MspR9I	CCNGG	2 cut(s)	113, 182
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	2 cut(s)	113, 182
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	216, 283
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	70, 150
NlaIII	CATG	2 cut(s)	121, 163
NlaIV	GGNNCC	2 cut(s)	179, 308
NmuCI	GTSAC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	118
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	111, 180
PspGI	CCWGG	2 cut(s)	111, 180
PspN4I	GGNNCC	2 cut(s)	179, 308
PspPI	GGNCC	2 cut(s)	4, 145
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	279, 332
Sau3AI	GATC	2 cut(s)	70, 150
Sau96I	GGNCC	2 cut(s)	4, 145
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	113, 182
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	42, 141, 194, 288
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	21, 164, 175, 212
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	111, 180
StyI	CCWWGG	2 cut(s)	81, 117
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	99, 126
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	279, 332
Tru9I	TTAA	2 cut(s)	279, 332
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.