Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

34953 .. 36448

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCGAGTCCTCATTCGGCACGGTGGGAGAGTCATTGACCCTTTTAGGAGTTCATTAACTCCTAAAAGTGTGGAAGCATTGATTTGCTTGCAAAACTTGGATCAAAAAACGAGATCAATCGACATTGAGTATTATCCAAGCCTAGAAGAGCTTGAGTTTTATGAAAAAATGGAGAGAGATGTAGCAAAGGGAAAAGCGATAGCTGCTGAAAGTGATGAAGAAGAACCGACGCCAAAGCTAGAACCTCAAGCTCAAAGTCTGCAAAAGTCTCCAAAAGAGCTGCAGCTGCAACTCCTTCAACAAGTGCCGCTGCGGGACCTCAAAATCTGCAAAACCACCAAAACAAGAGGCTGCCGCCACCAAGAAAAGCTAAAGGGAAAAAAATTTGAAGATGGAGGAGGAGGAGCAGTGCATGGCGCAATAGCATGGAATCGATGGAAGTTTGGTTGTTCACTTGTTGTCTTGTTGAACATTGTTTTGGTTTTTAATTTGTTATGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413

Protein Analysis

167

Amino Acids

18.93

Weight (kDa)

8.72

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	308, 313, 355
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	299, 389, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	7 cut(s)	151, 203, 238, 251, 280, 286, 370
AluI	AGCT	7 cut(s)	151, 203, 238, 251, 280, 286, 370
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	108
ApeKI	GCWGC	6 cut(s)	203, 280, 283, 286, 310, 351
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	316
BbvI	GCAGC	6 cut(s)	190, 267, 273, 295, 297, 338
BccI	CCATC	2 cut(s)	386, 429
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	143, 239
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	8 cut(s)	204, 281, 284, 287, 308, 311, 352, 355
BlsI	GCNGC	8 cut(s)	205, 282, 285, 288, 309, 312, 353, 356
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	173, 231
Bsa29I	ATCGAT	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
BseCI	ATCGAT	1 cut(s)	433
BseRI	GAGGAG	3 cut(s)	411, 414, 417
BseXI	GCAGC	6 cut(s)	190, 267, 273, 295, 297, 338
BshVI	ATCGAT	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	100, 113
BspACI	CCGC	3 cut(s)	308, 313, 355
BspDI	ATCGAT	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	141
BssMI	GATC	2 cut(s)	100, 113
BssNI	GRCGYC	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	103, 116
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	100, 113
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 286
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	6 cut(s)	190, 267, 273, 295, 297, 338
Bsu15I	ATCGAT	1 cut(s)	433
BsuTUI	ATCGAT	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	433
CseI	GACGC	1 cut(s)	238
CviAII	CATG	2 cut(s)	413, 426
CviJI	RGCY	9 cut(s)	141, 151, 203, 238, 251, 280, 286, 351, 370
CviKI_1	RGCY	9 cut(s)	141, 151, 203, 238, 251, 280, 286, 351, 370
DpnI	GATC	2 cut(s)	102, 115
DpnII	GATC	2 cut(s)	100, 113
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	316
FaeI	CATG	2 cut(s)	416, 429
FaiI	YATR	4 cut(s)	162, 414, 427, 496
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	2 cut(s)	412, 425
FauI	CCCGC	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	204, 281, 284, 287, 308, 311, 352, 355
Fsp4HI	GCNGC	8 cut(s)	204, 281, 284, 287, 308, 311, 352, 355
FspBI	CTAG	2 cut(s)	143, 239
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	8 cut(s)	204, 281, 284, 287, 308, 311, 352, 355
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	416, 429
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	6, 30, 430
Hpy166II	GTNNAC	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	6 cut(s)	91, 262, 283, 289, 330, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 286
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	416, 429
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	100, 113
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	6 cut(s)	190, 267, 273, 295, 297, 338
MaeI	CTAG	2 cut(s)	143, 239
MalI	GATC	2 cut(s)	102, 115
MboI	GATC	2 cut(s)	100, 113
MboII	GAAGA	4 cut(s)	158, 230, 233, 401
MluCI	AATT	2 cut(s)	383, 487
MlyI	GAGTC	2 cut(s)	15, 39
MnlI	CCTC	7 cut(s)	20, 255, 329, 341, 389, 392, 395
MseI	TTAA	3 cut(s)	56, 486, 502
MspA1I	CMGCKG	2 cut(s)	286, 310
MwoI	GCNNNNNNNGC	2 cut(s)	203, 286
NdeII	GATC	2 cut(s)	100, 113
NlaIII	CATG	2 cut(s)	416, 429
NlaIV	GGNNCC	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	8 cut(s)	205, 282, 285, 288, 309, 312, 353, 356
PleI	GAGTC	2 cut(s)	14, 38
PpsI	GAGTC	2 cut(s)	14, 38
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	56, 486, 502
SatI	GCNGC	8 cut(s)	204, 281, 284, 287, 308, 311, 352, 355
Sau3AI	GATC	2 cut(s)	100, 113
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	15, 39
SetI	ASST	9 cut(s)	153, 205, 240, 247, 253, 282, 288, 321, 372
SfcI	CTRYAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	316
SmlI	CTYRAG	2 cut(s)	152, 246
SmoI	CTYRAG	2 cut(s)	152, 246
Sse9I	AATT	2 cut(s)	383, 487
SsiI	CCGC	3 cut(s)	308, 313, 355
SspMI	CTAG	2 cut(s)	143, 239
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	120, 433
TasI	AATT	2 cut(s)	383, 487
TauI	GCSGC	2 cut(s)	310, 357
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	56, 486, 502
Tru9I	TTAA	3 cut(s)	56, 486, 502
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	6 cut(s)	203, 280, 283, 286, 310, 351
TspDTI	ATGAA	3 cut(s)	42, 177, 231
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	143, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.