RLG00000016817

GTP-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
10308651 .. 10317824
9174 bp
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UTR
Exon/CDS
Intron
RLM00000016817

Sequence Viewer

Length: 777 bp
ATGAAGATGAGGCAAGCCGAGGAGGAGCACGAGGCAGATAGTGTGGCTTCAGATCAGAACGACGGCCATCGTAATTTGACGGGCGAGTTCCTAGTCGGCTACTCTCTGGCTCTCTGCGAGACTGCGACTGGGTCTTCGGTCTTCCACTCTTCCTCACCTCTACAGCTCTGCCTCTCAGCTCTCAGCTCTCACAATCGGTCTGCGTCTCTGCCTCCCAGGTACACCAAGGTGGTCTTGATTGGCGACTCCGGCGTCGGCAAGTCCAATCTCCTCTCCAGGTTCACCAAGAACGAGTTCAACCGTGAGTCCAAGTCCACTATTGTTGTCGAGTTCGCTAGCCAAATCGGTCATCAAGGCCCAGATTTGGGAAACTACTGGCCAAGAAAGCTTGTATTTTCCCGGACATTGTACAGACTTGAATACTTGATGGCAACCTCATCGGATTCAAGTCATACAGTCAGTTCTCATTATGATGGTGATAATGATGAAATTGTTGTTGTTGGGAATGATGCAAATGATGTGTCTCAGCAAGATGTAGCAAAGGGAAAAGCAGTAGCTGCTGAAAGTGATGAACAAGAACCAACTGCCAAAGCTGGAACCTCAAGCTCAAAGTCTGCAAAAGTCTCCAAAAGAGCTGCAGCTGCAACTCCTTCAACAAGTGCCGCTGCTGGGACCTCAAAATCTGCAAAACCACCAAAACAAGGGCTGCTGCCATCAAGAAAAGCCAAAGAAGCAGGTCAAGCAGCAAAATGCAGCAGTGCTGCAAAAACTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000212 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000922 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005768 GO:0005794 GO:0005802 GO:0005819 GO:0005856 GO:0005933 GO:0005935 GO:0005938 GO:0006810 GO:0006886 GO:0006887 GO:0006996 GO:0007010 GO:0007017 GO:0007033 GO:0007049 GO:0007051 GO:0007107 GO:0007154 GO:0007165 GO:0007264 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010720 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019867 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030427 GO:0031023 GO:0031090 GO:0031410 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031982 GO:0031984 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0032940 GO:0033036 GO:0033365 GO:0034306 GO:0034307 GO:0034498 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0042144 GO:0042147 GO:0042173 GO:0042763 GO:0042764 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043937 GO:0043938 GO:0043940 GO:0043941 GO:0044087 GO:0044089 GO:0044380 GO:0044422 GO:0044424 GO:0044429 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0045595 GO:0045597 GO:0045787 GO:0045881 GO:0045921 GO:0046903 GO:0046907 GO:0048193 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051300 GO:0051301 GO:0051321 GO:0051445 GO:0051446 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055037 GO:0060284 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061796 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071988 GO:0072687 GO:0072697 GO:0072698 GO:0075296 GO:0090068 GO:0090619 GO:0090726 GO:0097159 GO:0097367 GO:0097576 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099568 GO:1901265 GO:1901363 GO:1902410 GO:1902441 GO:1903023 GO:1903024 GO:1903046 GO:1903047 GO:1903530 GO:1903532 GO:1905508 GO:1990151 GO:1990395 GO:1990778 GO:1990896 GO:2000241 GO:2000243
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

27.28

Weight (kDa)

7.73

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 76 - 114 1.7e-10 Ras family
Roc PF08477 76 - 114 1.5e-09 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 725
AciI CCGC 1 cut(s) 663
AcoI YGGCCR 2 cut(s) 64, 377
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 2 cut(s) 221, 410
AfiI CCNNNNNNNGG 4 cut(s) 364, 365, 669, 701
AgsI TTSAA 4 cut(s) 298, 419, 447, 654
AjnI CCWGG 2 cut(s) 215, 275
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 9 cut(s) 166, 179, 186, 388, 557, 593, 606, 635, 641
AluI AGCT 9 cut(s) 166, 179, 186, 388, 557, 593, 606, 635, 641
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 113, 210, 528, 628
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 3 cut(s) 64, 355, 377
ArsI GACNNNNNNTTYG 4 cut(s) 118, 150, 506, 538
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 356, 672
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 147, 274, 488
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 379
BauI CACGAG 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 126, 133
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 4 cut(s) 75, 421, 467, 721
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BciT130I CCWGG 2 cut(s) 217, 277
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 4 cut(s) 113, 210, 528, 628
BfaI CTAG 3 cut(s) 92, 336, 775
BfmI CTRYAG 2 cut(s) 161, 636
BfuAI ACCTGC 1 cut(s) 725
Bme1390I CCNGG 3 cut(s) 217, 277, 400
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 2 cut(s) 356, 672
BmiI GGNNCC 2 cut(s) 598, 673
BmrFI CCNGG 3 cut(s) 217, 277, 400
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 499
BmtI GCTAGC 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 126, 133
BpmI CTGGAG 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 18, 215, 225
Bsc4I CCNNNNNNNGG 4 cut(s) 364, 365, 669, 701
Bse1I ACTGG 2 cut(s) 133, 380
BseBI CCWGG 2 cut(s) 217, 277
BseDI CCNNGG 3 cut(s) 18, 215, 225
BseLI CCNNNNNNNGG 4 cut(s) 364, 365, 669, 701
BseMII CTCAG 3 cut(s) 189, 196, 539
BseNI ACTGG 2 cut(s) 133, 380
BseRI GAGGAG 3 cut(s) 35, 38, 260
BseYI CCCAGC 1 cut(s) 668
BshFI GGCC 3 cut(s) 66, 357, 379
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 249, 400
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 4 cut(s) 364, 365, 669, 701
BsmAI GTCTC 4 cut(s) 113, 210, 528, 628
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 3 cut(s) 66, 357, 379
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 663
BspANI GGCC 3 cut(s) 66, 357, 379
BspCNI CTCAG 3 cut(s) 188, 195, 538
BspLI GGNNCC 2 cut(s) 598, 673
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 725
BspOI GCTAGC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 2 cut(s) 133, 380
BssECI CCNNGG 3 cut(s) 18, 215, 225
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 217, 277
Bst4CI ACNGT 2 cut(s) 302, 457
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 15, 337
BstDEI CTNAG 3 cut(s) 175, 182, 525
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 4 cut(s) 113, 210, 528, 628
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 6 cut(s) 249, 385, 557, 641, 731, 740
BstNI CCWGG 2 cut(s) 217, 277
BstSCI CCNGG 3 cut(s) 215, 275, 398
BstSFI CTRYAG 2 cut(s) 161, 636
BstV2I GAAGAC 2 cut(s) 126, 133
BsuRI GGCC 3 cut(s) 66, 357, 379
BtsI GCAGTG 1 cut(s) 763
BtsIMutI CAGTG 1 cut(s) 763
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 2 cut(s) 15, 337
CaiI CAGNNNCTG 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 356, 672
CseI GACGC 2 cut(s) 192, 241
Csp6I GTAC 2 cut(s) 220, 409
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviQI GTAC 2 cut(s) 220, 409
DdeI CTNAG 3 cut(s) 175, 182, 525
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 64, 377
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 215, 275
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 210
FaiI YATR 2 cut(s) 453, 471
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 685
FspBI CTAG 3 cut(s) 92, 336, 775
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 3 cut(s) 66, 357, 379
HapII CCGG 2 cut(s) 249, 400
HgaI GACGC 2 cut(s) 192, 241
Hin1I GRCGYC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 245, 305, 443
HpaII CCGG 2 cut(s) 249, 400
HphI GGTGA 3 cut(s) 147, 274, 488
Hpy166II GTNNAC 3 cut(s) 222, 282, 315
Hpy188I TCNGA 3 cut(s) 52, 57, 442
Hpy188III TCNNGA 2 cut(s) 235, 717
Hpy8I GTNNAC 3 cut(s) 222, 282, 315
Hpy99I CGWCG 2 cut(s) 65, 257
HpyAV CCTTC 1 cut(s) 660
HpyCH4III ACNGT 2 cut(s) 302, 457
HpyCH4V TGCA 7 cut(s) 512, 617, 638, 644, 686, 753, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 249, 385, 557, 641, 731, 740
HpyF3I CTNAG 3 cut(s) 175, 182, 525
Hsp92I GRCGYC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 25
LweI GCATC 1 cut(s) 499
MaeI CTAG 3 cut(s) 92, 336, 775
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 16, 126, 133, 141
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 379
MluCI AATT 2 cut(s) 73, 489
MluNI TGGCCA 1 cut(s) 379
MlyI GAGTC 2 cut(s) 239, 314
Mox20I TGGCCA 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 379
MslI CAYNNNNRTG 2 cut(s) 227, 471
Msp20I TGGCCA 1 cut(s) 379
MspA1I CMGCKG 2 cut(s) 641, 665
MspI CCGG 2 cut(s) 249, 400
MspR9I CCNGG 3 cut(s) 217, 277, 400
MvaI CCWGG 2 cut(s) 217, 277
MwoI GCNNNNNNNGC 6 cut(s) 249, 385, 557, 641, 731, 740
NciI CCSGG 1 cut(s) 400
NdeII GATC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 598, 673
NmeAIII GCCGAG 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 443
PflFI GACNNNGTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 398
PleI GAGTC 2 cut(s) 239, 313
PpsI GAGTC 2 cut(s) 239, 313
PpuMI RGGWCCY 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 215, 275
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 2 cut(s) 215, 275
PspN4I GGNNCC 2 cut(s) 598, 673
PspPI GGNCC 2 cut(s) 356, 672
PspPPI RGGWCCY 1 cut(s) 672
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 557
PsyI GACNNNGTC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 2 cut(s) 221, 410
RsaNI GTAC 2 cut(s) 220, 409
RseI CAYNNNNRTG 2 cut(s) 227, 471
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 356, 672
SchI GAGTC 2 cut(s) 239, 314
ScrFI CCNGG 3 cut(s) 217, 277, 400
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 2 cut(s) 161, 636
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 2 cut(s) 227, 471
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
Sse9I AATT 2 cut(s) 73, 489
SsiI CCGC 1 cut(s) 663
SspMI CTAG 3 cut(s) 92, 336, 775
StyD4I CCNGG 3 cut(s) 215, 275, 398
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 302, 457
TaqI TCGA 1 cut(s) 327
TaqII GACCGA 3 cut(s) 127, 186, 335
TasI AATT 2 cut(s) 73, 489
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 1 cut(s) 763
TspDTI ATGAA 3 cut(s) 17, 501, 585
TspRI CASTG 1 cut(s) 763
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 3 cut(s) 92, 336, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.