Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003417.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

69969 .. 71461

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003417.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgagcactgattctcctgcgacgacgacaaggcccgtgacctcttcatctccgaacggaaagtcactccagctcttcgacatggcctacaggtcagacaacgactaccacttcaaggtcatcttgatcggccatgccggtatacgtaaatctgatttgttgtccaggttcatgcgcaatgagttcaacctcgagtctaagtccaccatcgtagcttttggtgtcagtgacagtagcttttgtgatcgccggaagttggccggaggtttgccggagatccgccggaagttggctggagttcgccagaggtcggccggagacctgccggagttggtcggcgacctcgccggagaggagagagagaataattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

124

Amino Acids

13.68

Weight (kDa)

8.68

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	3 cut(s)	130, 258, 312
AfiI	CCNNNNNNNGG	4 cut(s)	115, 256, 289, 310
AgsI	TTSAA	2 cut(s)	115, 187
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	73, 215, 237
AluI	AGCT	3 cut(s)	73, 215, 237
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	5 cut(s)	32, 84, 130, 258, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	166
BpmI	CTGGAG	2 cut(s)	53, 315
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	312
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 256, 289, 310
Bse118I	RCCGGY	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	4 cut(s)	115, 256, 289, 310
BseMI	GCAATG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	5 cut(s)	34, 86, 132, 260, 314
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	8 cut(s)	138, 250, 261, 272, 283, 315, 326, 348
BslI	CCNNNNNNNGG	4 cut(s)	115, 256, 289, 310
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	5 cut(s)	34, 86, 132, 260, 314
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	126, 244, 276
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	5 cut(s)	34, 86, 132, 260, 314
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	126, 244, 276
BssNAI	GTATAC	1 cut(s)	143
Bst1107I	GTATAC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	49, 80
BstBAI	YACGTR	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	129, 247, 279
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	126, 244, 276
BstMCI	CGRYCG	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BstZ17I	GTATAC	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	312
BsuRI	GGCC	5 cut(s)	34, 86, 132, 260, 314
BtsIMutI	CAGTG	2 cut(s)	6, 232
BveI	ACCTGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	3 cut(s)	82, 134, 172
CviJI	RGCY	9 cut(s)	34, 73, 86, 132, 215, 237, 260, 293, 314
CviKI_1	RGCY	9 cut(s)	34, 73, 86, 132, 215, 237, 260, 293, 314
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	128, 246, 278
DpnII	GATC	3 cut(s)	126, 244, 276
EaeI	YGGCCR	3 cut(s)	130, 258, 312
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	49, 80
EarI	CTCTTC	2 cut(s)	49, 80
EciI	GGCGGA	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	312
Eco105I	TACGTA	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	85, 137, 175
FaiI	YATR	4 cut(s)	83, 135, 143, 173
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	3 cut(s)	81, 133, 171
FblI	GTMKAC	1 cut(s)	142
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	53, 315
HaeIII	GGCC	5 cut(s)	34, 86, 132, 260, 314
HapII	CCGG	8 cut(s)	138, 250, 261, 272, 283, 315, 326, 348
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	85, 137, 175
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	11, 194
HpaII	CCGG	8 cut(s)	138, 250, 261, 272, 283, 315, 326, 348
Hpy166II	GTNNAC	2 cut(s)	143, 204
Hpy188I	TCNGA	3 cut(s)	54, 97, 154
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	143, 204
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	85, 137, 175
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	126, 244, 276
LguI	GCTCTTC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	37, 63, 227
MalI	GATC	3 cut(s)	128, 246, 278
MboI	GATC	3 cut(s)	126, 244, 276
MboII	GAAGA	2 cut(s)	36, 67
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	52, 200, 257, 300, 346, 353
MspI	CCGG	8 cut(s)	138, 250, 261, 272, 283, 315, 326, 348
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	126, 244, 276
NlaIII	CATG	3 cut(s)	85, 137, 175
NmuCI	GTSAC	3 cut(s)	37, 63, 227
NsbI	TGCGCA	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	126, 244, 276
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	146
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	78, 192
TasI	AATT	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	13, 232
TseFI	GTSAC	3 cut(s)	37, 63, 227
Tsp45I	GTSAC	3 cut(s)	37, 63, 227
TspDTI	ATGAA	2 cut(s)	36, 160
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	13, 232
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.