Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

322220 .. 322516

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgagcactgattctccggcgacgatgacaaggcccgcgacctcttcatctccaaccggaaagtctctccaactcttcgacatggcctacaagtcagacaacaattaccacttcaaggtcgtcttgataggccattccggtatcggcaaatccgatttgttgtccaggttcatgcgcaatgagttcaaccttgagtctaagtccaccatcggtgtcgagtttgccatccgaagcatccacgtcgatgattcaatcgttaaggcccagatttgggacaccgccggccaagaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

98

Amino Acids

10.84

Weight (kDa)

6.25

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 279
AcoI	YGGCCR	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	115, 270, 271
AgsI	TTSAA	3 cut(s)	115, 187, 252
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	5 cut(s)	32, 84, 130, 261, 283
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	33, 262
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	215, 233
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	33, 262
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	56, 137
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 270, 271
Bse118I	RCCGGY	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	225, 234
BseLI	CCNNNNNNNGG	3 cut(s)	115, 270, 271
BseMI	GCAATG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	5 cut(s)	34, 86, 132, 263, 285
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	17, 57, 138, 282
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	115, 270, 271
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	34, 86, 132, 263, 285
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	36, 279
BspANI	GGCC	5 cut(s)	34, 86, 132, 263, 285
BspFNI	CGCG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	49, 80
BstC8I	GCNNGC	2 cut(s)	36, 283
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	225, 234
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	5 cut(s)	34, 86, 132, 263, 285
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	225, 234
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	36, 283
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	33, 262
CviAII	CATG	2 cut(s)	82, 172
CviJI	RGCY	5 cut(s)	34, 86, 132, 263, 285
CviKI_1	RGCY	5 cut(s)	34, 86, 132, 263, 285
DdeI	CTNAG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	49, 80
EarI	CTCTTC	2 cut(s)	49, 80
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	85, 175
FaiI	YATR	2 cut(s)	83, 173
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	81, 171
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	212, 221
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
HaeIII	GGCC	5 cut(s)	34, 86, 132, 263, 285
HapII	CCGG	4 cut(s)	17, 57, 138, 282
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	85, 175
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	11, 194, 248
HpaII	CCGG	4 cut(s)	17, 57, 138, 282
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	97, 154, 230
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	25, 245
HpyCH4IV	ACGT	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	85, 175
HspAI	GCGC	1 cut(s)	175
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	30, 70, 151, 151, 178, 278
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	240
MboII	GAAGA	2 cut(s)	36, 67
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	77, 94
MnlI	CCTC	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	281
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	4 cut(s)	17, 57, 138, 282
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	38
NaeI	GCCGGC	1 cut(s)	283
NgoMIV	GCCGGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	85, 175
NsbI	TGCGCA	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	11, 248
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	33, 262
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	258
Sau96I	GGNCC	2 cut(s)	33, 262
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	44, 120, 170, 192, 243
SfaNI	GCATC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	36, 279
StyD4I	CCNGG	1 cut(s)	164
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	78, 216, 243
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	11, 248
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	36, 160
TspRI	CASTG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.