Rroxscaffold_3G00254050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001046
Physical Location & Seq
Reverse (-)
48192639 .. 48194237
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254050.1

Sequence Viewer

Length: 315 bp
ATGAGATCAATCGACATCGAGTATTATCCAAGCCTAGAAGAGCTTGAGTTTTATGAAAAAATGGAGAGAGATGTAGCAAAGGGAAAAGCAGTAGCTGCTGAAAGTGATGAAGAAGAACCAACTGCCAAAGCTGGAACCTCAAGCTCAAAGTCTACAAAAGTCTCCAAAAGTGTTGCAGCTGCAACTCCTTCAACAAGTGCCGCTGCCGGGACCTCAAAATCTGCAAAACCACCAAAACAAGGGCTGCTGCCACCACGAAAAGCTAAAGGGAAAAAATTTGAAGACGGAGGATCGGAGGAGCACGCATGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.1

Weight (kDa)

6.75

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 207, 239
AgsI TTSAA 2 cut(s) 192, 281
AluBI AGCT 6 cut(s) 43, 95, 131, 144, 179, 263
AluI AGCT 6 cut(s) 43, 95, 131, 144, 179, 263
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 6 cut(s) 95, 176, 179, 203, 244, 247
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 6 cut(s) 82, 166, 188, 190, 231, 234
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 35
BisI GCNGC 7 cut(s) 96, 177, 180, 201, 204, 245, 248
BlsI GCNGC 7 cut(s) 97, 178, 181, 202, 205, 246, 249
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 136, 211
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 65, 124
BpuMI CCSGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 239
BseLI CCNNNNNNNGG 2 cut(s) 207, 239
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 6 cut(s) 82, 166, 188, 190, 231, 234
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 207, 239
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 5, 290
BspACI CCGC 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 136, 211
BspPI GGATC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 33
BssMI GATC 2 cut(s) 5, 290
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 8, 293
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 5, 290
BstMWI GCNNNNNNNGC 2 cut(s) 95, 307
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 6 cut(s) 82, 166, 188, 190, 231, 234
BstV2I GAAGAC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 210
CviAII CATG 1 cut(s) 306
CviJI RGCY 8 cut(s) 33, 43, 95, 131, 144, 179, 244, 263
CviKI_1 RGCY 8 cut(s) 33, 43, 95, 131, 144, 179, 244, 263
DpnI GATC 2 cut(s) 7, 292
DpnII GATC 2 cut(s) 5, 290
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 210
FaeI CATG 1 cut(s) 309
FaiI YATR 2 cut(s) 54, 307
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 305
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 7 cut(s) 96, 177, 180, 201, 204, 245, 248
Fsp4HI GCNGC 7 cut(s) 96, 177, 180, 201, 204, 245, 248
FspBI CTAG 1 cut(s) 35
GluI GCNGC 7 cut(s) 96, 177, 180, 201, 204, 245, 248
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 309
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 176, 182, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 307
Hsp92II CATG 1 cut(s) 309
Kzo9I GATC 2 cut(s) 5, 290
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 2 cut(s) 117, 220
Lsp1109I GCAGC 6 cut(s) 82, 166, 188, 190, 231, 234
MaeI CTAG 1 cut(s) 35
MalI GATC 2 cut(s) 7, 292
MboI GATC 2 cut(s) 5, 290
MboII GAAGA 4 cut(s) 50, 122, 125, 293
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 275
MnlI CCTC 4 cut(s) 148, 223, 281, 289
MspA1I CMGCKG 2 cut(s) 179, 203
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 95, 307
NciI CCSGG 1 cut(s) 208
NdeII GATC 2 cut(s) 5, 290
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 2 cut(s) 136, 211
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 7 cut(s) 97, 178, 181, 202, 205, 246, 249
PpuMI RGGWCCY 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 136, 211
PspPI GGNCC 1 cut(s) 210
PspPPI RGGWCCY 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 7 cut(s) 96, 177, 180, 201, 204, 245, 248
Sau3AI GATC 2 cut(s) 5, 290
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 303
SetI ASST 8 cut(s) 45, 97, 133, 140, 146, 181, 215, 265
SinI GGWCC 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 44, 139
SmoI CTYRAG 2 cut(s) 44, 139
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 206
TaqI TCGA 2 cut(s) 12, 18
TasI AATT 1 cut(s) 275
TauI GCSGC 1 cut(s) 203
TseI GCWGC 6 cut(s) 95, 176, 179, 203, 244, 247
TspDTI ATGAA 2 cut(s) 69, 123
TspGWI ACGGA 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 152
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.