Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

46977438 .. 46977883

Gene Structure 446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGAAGAAGCTCCAATCAGAGCTACCTCACTGGAGTCCAACTCAAATCTCTCTGATTCTCTCTGATTCTCTCCGATTCACTCAGATCTCCAATTTCGACTCGAGACGCCTCACGCGCCTCAGTTTCGGCAGCTCCCTTCCTCCACCGCCATTATCGCCTCTTCCTCCACCTCACCTGCATCGGAAACCTAAAAGAGCATTGATGCTCAGGCGACGACAACAAGGCATCGACAAATCCGATTTGTTGTCCAGGTTCATGCGCAACGAGTTCAACCTCGAGTCTAAGTCGACCATTGGTGTCAAGTTTGCCACCCGAAGCATCCATGTCGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

113

Amino Acids

12.96

Weight (kDa)

11.38

Isoelectric Point (pI)

76.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	186
Acc16I	TGCGCA	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	118
AciI	CCGC	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	13, 25, 135
AluI	AGCT	3 cut(s)	13, 25, 135
Alw26I	GTCTC	1 cut(s)	100
Ama87I	CYCGRG	2 cut(s)	103, 278
ApeKI	GCWGC	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	120, 264
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	103, 278
BbvI	GCAGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	253
BmeT110I	CYCGRG	2 cut(s)	103, 278
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	4 cut(s)	190, 195, 237, 330
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	98, 136, 223
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	118
BsiHKCI	CYCGRG	2 cut(s)	103, 278
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsoBI	CYCGRG	2 cut(s)	103, 278
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	97, 135, 222
BspFNI	CGCG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	84, 122, 209, 285
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	120, 264
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 157
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	120, 264
CseI	GACGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	259, 326
CviJI	RGCY	3 cut(s)	13, 25, 135
CviKI_1	RGCY	3 cut(s)	13, 25, 135
DdeI	CTNAG	4 cut(s)	84, 122, 209, 285
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	103, 278
EcoRII	CCWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	2 cut(s)	262, 329
FaiI	YATR	2 cut(s)	260, 327
FatI	CATG	2 cut(s)	258, 325
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	133
FspI	TGCGCA	1 cut(s)	263
GlaI	GCGC	2 cut(s)	119, 263
GluI	GCNGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	120, 264
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	262, 329
Hin6I	GCGC	2 cut(s)	118, 262
HinP1I	GCGC	2 cut(s)	118, 262
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	6 cut(s)	37, 58, 68, 78, 101, 281
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	7 cut(s)	22, 57, 67, 77, 87, 186, 241
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 157
HpyF3I	CTNAG	4 cut(s)	84, 122, 209, 285
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	262, 329
HspAI	GCGC	2 cut(s)	118, 262
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	18, 140
LpnPI	CCDG	5 cut(s)	19, 191, 196, 238, 265
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	4 cut(s)	190, 195, 237, 330
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	3 cut(s)	16, 19, 155
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	3 cut(s)	46, 95, 290
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	39, 122, 131, 153, 171, 177, 183, 287
MslI	CAYNNNNRTG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	117, 157
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	262, 329
NsbI	TGCGCA	1 cut(s)	263
PaeR7I	CTCGAG	2 cut(s)	103, 278
PaqCI	CACCTGC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	58, 68, 78
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	3 cut(s)	45, 95, 289
PpsI	GAGTC	3 cut(s)	45, 95, 289
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	289
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	3 cut(s)	46, 95, 290
ScrFI	CCNGG	1 cut(s)	253
SetI	ASST	9 cut(s)	15, 27, 31, 137, 175, 180, 193, 257, 279
SfaNI	GCATC	4 cut(s)	190, 195, 237, 330
Sfr274I	CTCGAG	2 cut(s)	103, 278
SlaI	CTCGAG	2 cut(s)	103, 278
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	103, 278
SmoI	CTYRAG	2 cut(s)	103, 278
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	251
TaqI	TCGA	6 cut(s)	99, 104, 231, 279, 290, 330
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	58, 68, 78
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	17, 247
TspRI	CASTG	1 cut(s)	38
XhoI	CTCGAG	2 cut(s)	103, 278
XmiI	GTMKAC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.