Rh7DG246900

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001046
Physical Location & Seq
Forward (+)
25453424 .. 25453730
307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG246900.1

Sequence Viewer

Length: 252 bp
ATGAGCACTGATTCTCCGGCGACGACGACAAGGCCTGCGACCTCTTCATCTCCAACCGGAAAGTCGCTCCAGCTCTTCGACATGGCCTACAGGTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCCGGTATCGGCAAATCGGATTTGTTGTCCAGGTTCATGTGCAATGAGTTCAACCTCGAGTCTAAGTCCACCATCGGTGTTGAGTTTGCCACCCGGAGCAACCATGTCGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

83

Amino Acids

9.12

Weight (kDa)

5.82

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 39 - 82 4.2e-10 Ras family
Roc PF08477 39 - 78 6e-09 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 115, 187
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 8
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 32, 84, 130
AsuC2I CCSGG 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 215
BcgI CGANNNNNNTGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 166, 229
BmeT110I CYCGRG 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 166, 229
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 184
BshFI GGCC 3 cut(s) 34, 86, 132
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 17, 57, 138, 229
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 3 cut(s) 34, 86, 132
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 3 cut(s) 34, 86, 132
BspQI GCTCTTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 49, 80
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 164, 227
BstSFI CTRYAG 1 cut(s) 88
BsuRI GGCC 3 cut(s) 34, 86, 132
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 137
CviAII CATG 4 cut(s) 82, 134, 172, 239
CviJI RGCY 4 cut(s) 34, 73, 86, 132
CviKI_1 RGCY 4 cut(s) 34, 73, 86, 132
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 49, 80
EarI CTCTTC 2 cut(s) 49, 80
Eco147I AGGCCT 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 4 cut(s) 85, 137, 175, 242
FaiI YATR 4 cut(s) 83, 135, 173, 240
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 4 cut(s) 81, 133, 171, 238
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 3 cut(s) 34, 86, 132
HapII CCGG 4 cut(s) 17, 57, 138, 229
Hin1II CATG 4 cut(s) 85, 137, 175, 242
HinfI GANTC 2 cut(s) 11, 194
HpaII CCGG 4 cut(s) 17, 57, 138, 229
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 97, 154
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 25, 28
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 4 cut(s) 85, 137, 175, 242
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 72, 231
LpnPI CCDG 9 cut(s) 30, 48, 70, 76, 83, 151, 151, 178, 242
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 36, 67
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 52, 200
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 4 cut(s) 17, 57, 138, 229
MspR9I CCNGG 2 cut(s) 166, 229
MvaI CCWGG 1 cut(s) 166
NciI CCSGG 1 cut(s) 229
NdeII GATC 1 cut(s) 126
NlaIII CATG 4 cut(s) 85, 137, 175, 242
PaeR7I CTCGAG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 166, 229
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 44, 75, 95, 120, 170, 192
SfcI CTRYAG 1 cut(s) 88
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 34
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 164, 227
TaqI TCGA 3 cut(s) 78, 192, 243
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 36, 160
TspRI CASTG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.