RLG00000007653

GTP-binding Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001046
Physical Location & Seq
Reverse (-)
19474625 .. 19479730
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007653

Sequence Viewer

Length: 819 bp
ATGACCGAAAGACCGGAAGGAACCGATTCAGACCGGCTGGTTCAGTTCCTAGTCGGCTACTCTCTGGCTCTCTGCGACTGCGACTCAGCTCTCTGGGTCTTTAATCTTCCACTCTTCCTCACCTCTGTAGCTCTGCCTCTCAGCTCTCATAATCGGTCTGCGTTTCTGCCTCCCAGGTACACCAAGGTGGTCTTGATTGGCGACTCCGGCGTCGGTAAGTCAAATCTCCTTTCCAGGTTCACCAAGAATGAGTTCAACCGCGAGTCCAAGTCCACCATTGCTGTCGAGTTCGCTGGCCAAATTAGTCATCAAGGACCAGATTTGGGACACTGCTGGCCAAGAAAGGTCAGCTTTCTGAATATTAACGATTTCTTGGACTCCCCTTTAGGTGCCTTCCCAAAGCTACAGGTCTGCAAAACATACACACAACAGAGCAAGAGGCAATGTCACAGCTTGATGGCAACCTCATCGGATTCAAGTCATACAGTCAGTTCTCATTATGATGGTGATAATGATGAAATTGTTGTTGTTGGGAATGATGTAAATGATGTGTCTCAGCAAGATGTAGTAAAGGGAAAAGCAGTAGCTGCTGAAAGTGATGAAGAAGAACCAACTGCCAAAGCTGGAACCTCAAGCTCAAAGTCTGCAAAAGTCTCCAAAATAGCTGCAGCTGCAACTCCTTCAACAAGTGCTGCTGCTGGGACCTCAAAATCTGCAAAACCACCAAAACAAGGGCTGCTGCCACCAAGAAAAGCCAAAGAATGGTTTATTGGTTTTATTTTCAGCATTGCAGCCTTGTCGCTTGTTGCTAGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000212 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000922 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005768 GO:0005794 GO:0005802 GO:0005819 GO:0005856 GO:0005933 GO:0005935 GO:0005938 GO:0006810 GO:0006886 GO:0006887 GO:0006996 GO:0007010 GO:0007017 GO:0007033 GO:0007049 GO:0007051 GO:0007107 GO:0007154 GO:0007165 GO:0007264 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010720 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019867 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030427 GO:0031023 GO:0031090 GO:0031410 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031982 GO:0031984 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0032940 GO:0033036 GO:0033365 GO:0034306 GO:0034307 GO:0034498 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0042144 GO:0042147 GO:0042173 GO:0042763 GO:0042764 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043937 GO:0043938 GO:0043940 GO:0043941 GO:0044087 GO:0044089 GO:0044380 GO:0044422 GO:0044424 GO:0044429 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0045595 GO:0045597 GO:0045787 GO:0045881 GO:0045921 GO:0046903 GO:0046907 GO:0048193 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051300 GO:0051301 GO:0051321 GO:0051445 GO:0051446 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055037 GO:0060284 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061796 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071988 GO:0072687 GO:0072697 GO:0072698 GO:0075296 GO:0090068 GO:0090619 GO:0090726 GO:0097159 GO:0097367 GO:0097576 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099568 GO:1901265 GO:1901363 GO:1902410 GO:1902441 GO:1903023 GO:1903024 GO:1903046 GO:1903047 GO:1903530 GO:1903532 GO:1905508 GO:1990151 GO:1990395 GO:1990778 GO:1990896 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

273

Amino Acids

29.13

Weight (kDa)

7.65

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 62 - 99 1.5e-10 Ras family
Roc PF08477 62 - 100 5.6e-10 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 762
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 259
AcoI YGGCCR 2 cut(s) 295, 335
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 323, 731, 762
AgsI TTSAA 3 cut(s) 256, 477, 684
AjnI CCWGG 2 cut(s) 173, 233
AjuI GAANNNNNNNTTGG 4 cut(s) 236, 268, 753, 785
AleI CACNNNNGTG 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 558, 658
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 295, 335
ApeKI GCWGC 9 cut(s) 587, 665, 668, 671, 692, 695, 736, 739, 791
Asp700I GAANNNNTTC 2 cut(s) 25, 251
AspS9I GGNCC 2 cut(s) 314, 702
AsuHPI GGTGA 3 cut(s) 112, 232, 518
AvaII GGWCC 2 cut(s) 314, 702
BalI TGGCCA 2 cut(s) 297, 337
BanI GGYRCC 1 cut(s) 389
BbvI GCAGC 9 cut(s) 574, 652, 658, 679, 680, 682, 723, 726, 803
BccI CCATC 2 cut(s) 451, 497
BcgI CGANNNNNNTGC 4 cut(s) 450, 484, 780, 814
BciT130I CCWGG 2 cut(s) 175, 235
BcoDI GTCTC 2 cut(s) 558, 658
BfaI CTAG 2 cut(s) 50, 810
BfmI CTRYAG 3 cut(s) 126, 404, 666
BisI GCNGC 9 cut(s) 588, 666, 669, 672, 693, 696, 737, 740, 792
BlsI GCNGC 9 cut(s) 589, 667, 670, 673, 694, 697, 738, 741, 793
Bme1390I CCNGG 2 cut(s) 175, 235
Bme18I GGWCC 2 cut(s) 314, 702
BmgT120I GGNCC 2 cut(s) 314, 702
BmiI GGNNCC 4 cut(s) 22, 391, 628, 703
BmrFI CCNGG 2 cut(s) 175, 235
BpuEI CTTGAG 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 173, 183
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 731, 762
Bse118I RCCGGY 1 cut(s) 33
Bse3DI GCAATG 3 cut(s) 276, 449, 786
BseBI CCWGG 2 cut(s) 175, 235
BseDI CCNNGG 2 cut(s) 173, 183
BseLI CCNNNNNNNGG 3 cut(s) 323, 731, 762
BseMI GCAATG 3 cut(s) 276, 449, 786
BseMII CTCAG 3 cut(s) 99, 154, 569
BseXI GCAGC 9 cut(s) 574, 652, 658, 679, 680, 682, 723, 726, 803
BseYI CCCAGC 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 297, 337
BshNI GGYRCC 1 cut(s) 389
BsiSI CCGG 3 cut(s) 14, 34, 207
BslFI GGGAC 2 cut(s) 339, 715
BslI CCNNNNNNNGG 3 cut(s) 323, 731, 762
BsmAI GTCTC 2 cut(s) 558, 658
BsmFI GGGAC 2 cut(s) 339, 715
BsnI GGCC 2 cut(s) 297, 337
BspACI CCGC 1 cut(s) 259
BspANI GGCC 2 cut(s) 297, 337
BspCNI CTCAG 3 cut(s) 98, 153, 568
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 22, 391, 628, 703
BspMAI CTGCAG 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 3 cut(s) 276, 449, 786
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 173, 183
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 175, 235
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 295, 335
BstDEI CTNAG 3 cut(s) 85, 140, 555
BstFNI CGCG 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 558, 658
BstMWI GCNNNNNNNGC 3 cut(s) 207, 587, 671
BstNI CCWGG 2 cut(s) 175, 235
BstSCI CCNGG 2 cut(s) 173, 233
BstSFI CTRYAG 3 cut(s) 126, 404, 666
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 9 cut(s) 574, 652, 658, 679, 680, 682, 723, 726, 803
BsuRI GGCC 2 cut(s) 297, 337
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 295, 335
CaiI CAGNNNCTG 1 cut(s) 587
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 314, 702
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 178
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 85, 140, 555
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 2 cut(s) 295, 335
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 314, 702
EcoO109I RGGNCCY 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 173, 233
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaiI YATR 5 cut(s) 150, 421, 483, 501, 817
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 335, 367
FaqI GGGAC 2 cut(s) 339, 715
Fnu4HI GCNGC 9 cut(s) 588, 666, 669, 672, 693, 696, 737, 740, 792
Fsp4HI GCNGC 9 cut(s) 588, 666, 669, 672, 693, 696, 737, 740, 792
FspBI CTAG 2 cut(s) 50, 810
GluI GCNGC 9 cut(s) 588, 666, 669, 672, 693, 696, 737, 740, 792
GsaI CCCAGC 1 cut(s) 702
HaeIII GGCC 2 cut(s) 297, 337
HapII CCGG 3 cut(s) 14, 34, 207
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
HinfI GANTC 6 cut(s) 26, 83, 203, 263, 377, 473
HpaII CCGG 3 cut(s) 14, 34, 207
HphI GGTGA 3 cut(s) 112, 232, 518
Hpy166II GTNNAC 3 cut(s) 180, 240, 273
Hpy188I TCNGA 3 cut(s) 31, 357, 472
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 3 cut(s) 180, 240, 273
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 11, 403, 690
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 6 cut(s) 414, 647, 668, 674, 716, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 587, 671
HpyF3I CTNAG 3 cut(s) 85, 140, 555
Hsp92I GRCGYC 1 cut(s) 210
Lsp1109I GCAGC 9 cut(s) 574, 652, 658, 679, 680, 682, 723, 726, 803
MaeI CTAG 2 cut(s) 50, 810
MaeIII GTNAC 1 cut(s) 446
MboII GAAGA 4 cut(s) 98, 106, 614, 617
MlsI TGGCCA 2 cut(s) 297, 337
MluCI AATT 2 cut(s) 300, 519
MluNI TGGCCA 2 cut(s) 297, 337
MlyI GAGTC 4 cut(s) 77, 197, 272, 371
MnlI CCTC 8 cut(s) 128, 133, 147, 180, 432, 475, 640, 715
Mox20I TGGCCA 2 cut(s) 297, 337
MroXI GAANNNNTTC 2 cut(s) 25, 251
MscI TGGCCA 2 cut(s) 297, 337
MseI TTAA 2 cut(s) 102, 363
MslI CAYNNNNRTG 2 cut(s) 185, 501
Msp20I TGGCCA 2 cut(s) 297, 337
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 3 cut(s) 14, 34, 207
MspR9I CCNGG 2 cut(s) 175, 235
MvaI CCWGG 2 cut(s) 175, 235
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 207, 587, 671
NlaIV GGNNCC 4 cut(s) 22, 391, 628, 703
NmuCI GTSAC 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 185
PdmI GAANNNNTTC 2 cut(s) 25, 251
PfeI GAWTC 2 cut(s) 26, 473
PflMI CCANNNNNTGG 1 cut(s) 762
PkrI GCNGC 9 cut(s) 589, 667, 670, 673, 694, 697, 738, 741, 793
PleI GAGTC 4 cut(s) 77, 197, 271, 371
PpsI GAGTC 4 cut(s) 77, 197, 271, 371
PpuMI RGGWCCY 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 173, 233
PspFI CCCAGC 1 cut(s) 698
PspGI CCWGG 2 cut(s) 173, 233
PspN4I GGNNCC 4 cut(s) 22, 391, 628, 703
PspPI GGNCC 2 cut(s) 314, 702
PspPPI RGGWCCY 1 cut(s) 702
PstI CTGCAG 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 185, 501
SaqAI TTAA 2 cut(s) 102, 363
SatI GCNGC 9 cut(s) 588, 666, 669, 672, 693, 696, 737, 740, 792
Sau96I GGNCC 2 cut(s) 314, 702
SchI GAGTC 4 cut(s) 77, 197, 272, 371
ScrFI CCNGG 2 cut(s) 175, 235
SfcI CTRYAG 3 cut(s) 126, 404, 666
SinI GGWCC 2 cut(s) 314, 702
SmiMI CAYNNNNRTG 2 cut(s) 185, 501
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 2 cut(s) 300, 519
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 50, 810
StyD4I CCNGG 2 cut(s) 173, 233
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 1 cut(s) 285
TaqII GACCGA 2 cut(s) 20, 144
TasI AATT 2 cut(s) 300, 519
TfiI GAWTC 2 cut(s) 26, 473
Tru1I TTAA 2 cut(s) 102, 363
Tru9I TTAA 2 cut(s) 102, 363
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 9 cut(s) 587, 665, 668, 671, 692, 695, 736, 739, 791
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 531, 615, 804
TspRI CASTG 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 762
VpaK11BI GGWCC 2 cut(s) 314, 702
XmnI GAANNNNTTC 2 cut(s) 25, 251
XspI CTAG 2 cut(s) 50, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.