Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001124.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

30009 .. 30537

Gene Structure 529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001124.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgatgaacaacctcatcgcagcgacccaattggcggacgacgaagccggaggcgaggagtacttgttcaaggtggtcctcatcggcgactccgccttcggcaagtcaaacctgctctcgtgcttcgctaggaacgagtttgatcaaaactccaaggccacaattggggtcgagtttcggacccaggccatggaaatcgacggcaaagaggtcaaggcccagatctgggacatgacgggacaagagcgcttccaggctgtcacgttggcttactacttaggcgcggtgggcacgcttgtagtgtatgatattagtaggaagaccacttttgagagtgtggagcgctggcttaatgagcttaccagtaagttttttgggtacccttttgttgttgttgcttgtttaaacggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

138

Amino Acids

15.39

Weight (kDa)

4.62

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccII	CGCG	1 cut(s)	284
AciI	CCGC	3 cut(s)	35, 93, 284
AfaI	GTAC	2 cut(s)	62, 380
AfeI	AGCGCT	2 cut(s)	248, 344
AfiI	CCNNNNNNNGG	5 cut(s)	34, 165, 190, 225, 226
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	183, 252
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Aor51HI	AGCGCT	2 cut(s)	248, 344
AoxI	GGCC	3 cut(s)	156, 186, 216
ApeKI	GCWGC	1 cut(s)	20
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp718I	GGTACC	1 cut(s)	378
AspLEI	GCGC	3 cut(s)	249, 284, 345
AspS9I	GGNCC	3 cut(s)	76, 180, 217
AvaII	GGWCC	2 cut(s)	76, 180
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	2 cut(s)	185, 254
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	2 cut(s)	250, 346
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	185, 254
Bme18I	GGWCC	2 cut(s)	76, 180
BmgT120I	GGNCC	3 cut(s)	76, 180, 217
BmiI	GGNNCC	2 cut(s)	182, 380
BmrFI	CCNGG	2 cut(s)	185, 254
BpiI	GAAGAC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	153, 183, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 165, 190, 225, 226
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	185, 254
BseDI	CCNNGG	3 cut(s)	153, 183, 189
BseLI	CCNNNNNNNGG	5 cut(s)	34, 165, 190, 225, 226
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	158, 188, 218
BshNI	GGYRCC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	242, 252
BslI	CCNNNNNNNGG	5 cut(s)	34, 165, 190, 225, 226
BsmFI	GGGAC	2 cut(s)	242, 252
BsnI	GGCC	3 cut(s)	158, 188, 218
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	142, 222
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	35, 93, 284
BspANI	GGCC	3 cut(s)	158, 188, 218
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	182, 380
BspMI	ACCTGC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	153, 183, 189
BssMI	GATC	2 cut(s)	142, 222
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	153, 189
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	185, 254
Bst4CI	ACNGT	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	293, 347
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	2 cut(s)	250, 346
BstHHI	GCGC	3 cut(s)	249, 284, 345
BstKTI	GATC	2 cut(s)	145, 225
BstMBI	GATC	2 cut(s)	142, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 355
BstNI	CCWGG	2 cut(s)	185, 254
BstSCI	CCNGG	2 cut(s)	183, 252
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	158, 188, 218
BtgI	CCRYGG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	293, 347
CfoI	GCGC	3 cut(s)	249, 284, 345
Cfr13I	GGNCC	3 cut(s)	76, 180, 217
Csp6I	GTAC	2 cut(s)	61, 379
CviAII	CATG	2 cut(s)	190, 232
CviJI	RGCY	8 cut(s)	47, 158, 188, 218, 257, 269, 349, 358
CviKI_1	RGCY	8 cut(s)	47, 158, 188, 218, 257, 269, 349, 358
CviQI	GTAC	2 cut(s)	61, 379
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	2 cut(s)	144, 224
DpnII	GATC	2 cut(s)	142, 222
DraI	TTTAAA	1 cut(s)	405
EciI	GGCGGA	2 cut(s)	50, 82
Eco130I	CCWWGG	2 cut(s)	153, 189
Eco47I	GGWCC	2 cut(s)	76, 180
Eco47III	AGCGCT	2 cut(s)	248, 344
EcoRII	CCWGG	2 cut(s)	183, 252
EcoT14I	CCWWGG	2 cut(s)	153, 189
ErhI	CCWWGG	2 cut(s)	153, 189
FaeI	CATG	2 cut(s)	193, 235
FaiI	YATR	3 cut(s)	191, 233, 306
FaqI	GGGAC	2 cut(s)	242, 252
FatI	CATG	2 cut(s)	189, 231
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	3 cut(s)	248, 283, 344
GluI	GCNGC	1 cut(s)	21
HaeII	RGCGCY	2 cut(s)	250, 346
HaeIII	GGCC	3 cut(s)	158, 188, 218
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	3 cut(s)	249, 284, 345
Hin1II	CATG	2 cut(s)	193, 235
Hin6I	GCGC	3 cut(s)	247, 282, 343
HinP1I	GCGC	3 cut(s)	247, 282, 343
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	180
Hpy99I	CGWCG	2 cut(s)	44, 203
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 355
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	193, 235
HspAI	GCGC	3 cut(s)	247, 282, 343
KpnI	GGTACC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 222
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	144, 224
MboI	GATC	2 cut(s)	142, 222
MboII	GAAGA	1 cut(s)	331
MfeI	CAATTG	2 cut(s)	29, 162
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	29, 162
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	23, 44, 49, 89, 202
MseI	TTAA	2 cut(s)	351, 404
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	185, 254
MssI	GTTTAAAC	1 cut(s)	405
MunI	CAATTG	2 cut(s)	29, 162
MvaI	CCWGG	2 cut(s)	185, 254
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	288, 355
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	142, 222
NlaIII	CATG	2 cut(s)	193, 235
NlaIV	GGNNCC	2 cut(s)	182, 380
NmuCI	GTSAC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	83
PmeI	GTTTAAAC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	183, 252
PspGI	CCWGG	2 cut(s)	183, 252
PspN4I	GGNNCC	2 cut(s)	182, 380
PspPI	GGNCC	3 cut(s)	76, 180, 217
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	62, 380
RsaNI	GTAC	2 cut(s)	61, 379
SaqAI	TTAA	2 cut(s)	351, 404
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	142, 222
Sau96I	GGNCC	3 cut(s)	76, 180, 217
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	185, 254
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	6 cut(s)	15, 75, 114, 213, 266, 360
SinI	GGWCC	2 cut(s)	76, 180
Sse9I	AATT	2 cut(s)	29, 162
SsiI	CCGC	3 cut(s)	35, 93, 284
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	183, 252
StyI	CCWWGG	2 cut(s)	153, 189
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	171, 198
TasI	AATT	2 cut(s)	29, 162
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	351, 404
Tru9I	TTAA	2 cut(s)	351, 404
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	76, 180
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.