Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

55395859 .. 55400298

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATCGATCGGCGAGCTTGTTACGAACTCAACCAAAGAAGCCCGAAGCTTTGCCGACGTCGGAGCTGCATTTTCCGGCCGGGTCGTGCTACTTCAAACTGTGCGGACTTGCGGCGCCGCCGTGGGCTCGAATCGTCGACGAAGACCACCACGAGACGACCGGAGCAAGGAGGCGACCCATCCCGGAAAGTTTCGTCGCCGGAGGTGGCCGGAGCTGCAAGTTCCGACCGGATGTAGCGACAAAGGGAAAAGCAATTGTTGTTGAAAGTGATGAAGAAGAACCAACTGCCAAAGCTGGAACCTCAAGCTCAAAGTCTCCAAAAGTCTCCAAAAGAGTTGCAGCTACAACTCCTTCCACAAGTGCCGCTTCGGGACCTCAAAATCTTCAAAAGCAACAAAACAAGGGTTGCTGCCACCAAGAAAAGCTAAAGTTAACTGTTAAGACAATATGTGCTGCTATGTTGGTGAACTTGGTGTTGATATATGTTGATCAGACGATGTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.2

Weight (kDa)

9.32

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	4 cut(s)	105, 113, 119, 366
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	78, 208
AcyI	GRCGYC	2 cut(s)	59, 116
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	97, 266, 389, 505
AluBI	AGCT	8 cut(s)	18, 50, 67, 216, 296, 309, 344, 427
AluI	AGCT	8 cut(s)	18, 50, 67, 216, 296, 309, 344, 427
Alw26I	GTCTC	3 cut(s)	149, 321, 331
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	78, 208
ApeKI	GCWGC	5 cut(s)	67, 216, 341, 411, 455
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	82, 185
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	5 cut(s)	54, 203, 353, 398, 442
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	82, 185
BcoDI	GTCTC	3 cut(s)	149, 321, 331
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	8 cut(s)	68, 114, 119, 217, 342, 366, 412, 456
BlsI	GCNGC	8 cut(s)	69, 115, 120, 218, 343, 367, 413, 457
Bme1390I	CCNGG	2 cut(s)	82, 185
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	117, 301, 375
BmrFI	CCNGG	2 cut(s)	82, 185
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	82, 185
Bsa29I	ATCGAT	1 cut(s)	7
BsaHI	GRCGYC	2 cut(s)	59, 116
BsaJI	CCNNGG	1 cut(s)	122
BsaWI	WCCGGW	2 cut(s)	161, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	180, 238
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	5 cut(s)	54, 203, 353, 398, 442
Bsh1285I	CGRYCG	4 cut(s)	11, 81, 162, 230
BshFI	GGCC	2 cut(s)	80, 210
BshNI	GGYRCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	4 cut(s)	11, 81, 162, 230
BsiSI	CCGG	7 cut(s)	77, 81, 162, 185, 201, 211, 230
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	3 cut(s)	149, 321, 331
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	80, 210
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	4, 8, 490
BspACI	CCGC	4 cut(s)	105, 113, 119, 366
BspANI	GGCC	2 cut(s)	80, 210
BspDI	ATCGAT	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	117, 301, 375
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	3 cut(s)	4, 8, 490
BssNI	GRCGYC	2 cut(s)	59, 116
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	102, 439
BstACI	GRCGYC	2 cut(s)	59, 116
BstC8I	GCNNGC	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	180, 238
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	7, 11, 493
BstMAI	GTCTC	3 cut(s)	149, 321, 331
BstMBI	GATC	3 cut(s)	4, 8, 490
BstMCI	CGRYCG	4 cut(s)	11, 81, 162, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	80, 183
BstV1I	GCAGC	5 cut(s)	54, 203, 353, 398, 442
BstV2I	GAAGAC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	80, 210
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	180, 238
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	374
ClaI	ATCGAT	1 cut(s)	7
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	3 cut(s)	6, 10, 492
DpnII	GATC	3 cut(s)	4, 8, 490
EaeI	YGGCCR	2 cut(s)	78, 208
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	374
Eco52I	CGGCCG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	4 cut(s)	451, 461, 484, 486
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	8 cut(s)	68, 114, 119, 217, 342, 366, 412, 456
FokI	GGATG	2 cut(s)	167, 245
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	8 cut(s)	68, 114, 119, 217, 342, 366, 412, 456
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	8 cut(s)	68, 114, 119, 217, 342, 366, 412, 456
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	80, 210
HapII	CCGG	7 cut(s)	77, 81, 162, 185, 201, 211, 230
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	59, 116
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	2 cut(s)	139, 435
HindII	GTYRAC	2 cut(s)	139, 435
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	1 cut(s)	132
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	7 cut(s)	77, 81, 162, 185, 201, 211, 230
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	3 cut(s)	139, 435, 469
Hpy188I	TCNGA	3 cut(s)	64, 227, 495
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	3 cut(s)	139, 435, 469
Hpy99I	CGWCG	5 cut(s)	61, 64, 140, 143, 200
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	2 cut(s)	102, 439
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	70, 219, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	59, 116
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	490
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	4, 8, 490
LmnI	GCTCC	3 cut(s)	64, 164, 213
LpnPI	CCDG	8 cut(s)	90, 94, 175, 198, 214, 224, 243, 282
Lsp1109I	GCAGC	5 cut(s)	54, 203, 353, 398, 442
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	3 cut(s)	6, 10, 492
MboI	GATC	3 cut(s)	4, 8, 490
MboII	GAAGA	4 cut(s)	155, 287, 290, 377
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	255, 505
Mly113I	GGCGCC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	42, 250
MnlI	CCTC	4 cut(s)	165, 197, 313, 387
MseI	TTAA	3 cut(s)	434, 441, 508
MspI	CCGG	7 cut(s)	77, 81, 162, 185, 201, 211, 230
MspR9I	CCNGG	2 cut(s)	82, 185
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	216
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	2 cut(s)	82, 185
NdeII	GATC	3 cut(s)	4, 8, 490
NlaIV	GGNNCC	3 cut(s)	117, 301, 375
PfeI	GAWTC	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	8 cut(s)	69, 115, 120, 218, 343, 367, 413, 457
Ple19I	CGATCG	1 cut(s)	11
PluTI	GGCGCC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
PspN4I	GGNNCC	3 cut(s)	117, 301, 375
PspPI	GGNCC	1 cut(s)	374
PspPPI	RGGWCCY	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	434, 441, 508
SatI	GCNGC	8 cut(s)	68, 114, 119, 217, 342, 366, 412, 456
Sau3AI	GATC	3 cut(s)	4, 8, 490
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	82, 185
SduI	GDGCHC	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	117
SgrDI	CGTCGACG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	255, 505
SsiI	CCGC	4 cut(s)	105, 113, 119, 366
SspDI	GGCGCC	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	80, 183
TaaI	ACNGT	2 cut(s)	102, 439
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	7, 130, 138
TasI	AATT	2 cut(s)	255, 505
TauI	GCSGC	3 cut(s)	116, 121, 368
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	434, 441, 508
Tru9I	TTAA	3 cut(s)	434, 441, 508
TseI	GCWGC	5 cut(s)	67, 216, 341, 411, 455
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.