Rh7DG389500

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001046
Physical Location & Seq
Reverse (-)
53258614 .. 53258910
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG389500.1

Sequence Viewer

Length: 297 bp
ATGAGCACTGATTCTCGGGCGACGATGACAAGGCCCGCGACCTCTTCATCTCCAACCGGAAAGTCTCTCCAACTCTTCGACATGGCCTACAGGTCAGACAACAATTACCACTTCAAGGTCGTCTTGATCGGCCATTCCAGTATCGGCAAATCCGATTTGTTGTCCAGGTTCATGAGCAATAAGTTCAACCTTGAGTCTAAGTCCACCATCGGTGTCGAGTTTGCCATCCGAAGCATCCACGTCGATGATTCAATCATTAAGGCCCAGATTTGGGACACCGCCTACCAAGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

8.07

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 39 - 97 1.4e-18 Ras family
Roc PF08477 39 - 97 1.7e-14 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 36, 279
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 3 cut(s) 115, 270, 271
AgsI TTSAA 3 cut(s) 115, 187, 252
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 4 cut(s) 32, 84, 130, 261
AspS9I GGNCC 2 cut(s) 33, 262
AvaI CYCGRG 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 215, 233
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 33, 262
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 270, 271
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 225, 234
BseLI CCNNNNNNNGG 3 cut(s) 115, 270, 271
BseNI ACTGG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 34, 86, 132, 263
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 115, 270, 271
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 4 cut(s) 34, 86, 132, 263
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 36, 279
BspANI GGCC 4 cut(s) 34, 86, 132, 263
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 49, 80
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 225, 234
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 88
BstUI CGCG 1 cut(s) 38
BsuRI GGCC 4 cut(s) 34, 86, 132, 263
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 225, 234
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 33, 262
CviAII CATG 2 cut(s) 82, 172
CviJI RGCY 4 cut(s) 34, 86, 132, 263
CviKI_1 RGCY 4 cut(s) 34, 86, 132, 263
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 49, 80
EarI CTCTTC 2 cut(s) 49, 80
Eco88I CYCGRG 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 85, 175
FaiI YATR 2 cut(s) 83, 173
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 81, 171
FauI CCCGC 1 cut(s) 43
FokI GGATG 2 cut(s) 212, 221
HaeIII GGCC 4 cut(s) 34, 86, 132, 263
HapII CCGG 1 cut(s) 57
Hin1II CATG 2 cut(s) 85, 175
HinfI GANTC 3 cut(s) 11, 194, 248
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 97, 154, 230
Hpy188III TCNNGA 2 cut(s) 124, 172
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 25, 245
HpyCH4IV ACGT 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 85, 175
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 6 cut(s) 70, 76, 151, 151, 178, 278
LweI GCATC 1 cut(s) 243
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 36, 67
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 77, 94
MnlI CCTC 1 cut(s) 52
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 85, 175
PagI TCATGA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 2 cut(s) 11, 248
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 2 cut(s) 33, 262
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 33, 262
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 44, 95, 120, 170, 192, 243
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 103
SsiI CCGC 2 cut(s) 36, 279
StyD4I CCNGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 78, 216, 243
TasI AATT 1 cut(s) 103
TfiI GAWTC 2 cut(s) 11, 248
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 36, 160
TspRI CASTG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.