Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

16489803 .. 16490222

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACGCGATCTACACGACTCCGGCTCTTCGACGAGGCCCTCCATCACCAATATCGTGCTCTTCCTCCGCCTCACCTGCATCCGGTGACAACGACAAGGCCCTCGGCTTCTTCATCCCCAATCGAAAATCCCAACCGGAAAGTCTCTCCGCTCTTCGAGATGGCCTATAGGTCGGACGGCGACTACGACTACCTCTTCAAGTTCGTCTTCCTCGGTGATTTCGACGTCGGTAAATCCAACCTCTTGTCCAAGTTCATTCGCAATGAGTTCAACCTCGGGTCTATATCCACCATCGGCGTCGAGTTCACCACTCGGAGCATCCATGTCAATGATAAGATCGTCAAGGCCCGATTTGGGACACCACCCGCCAAGAAAGGTGATAAGCCTTTGAATTCCATTCATAATTGTCATTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

9.67

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	67 - 116	1.5e-10	Ras family
Roc	PF08477	67 - 110	4.3e-08	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	68, 149, 366
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	2 cut(s)	225, 297
AfiI	CCNNNNNNNGG	2 cut(s)	82, 354
AgsI	TTSAA	3 cut(s)	199, 271, 391
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	4 cut(s)	36, 98, 162, 345
ApoI	RAATTY	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	37, 99, 346
AsuHPI	GGTGA	6 cut(s)	38, 65, 97, 227, 298, 389
AvaI	CYCGRG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	3 cut(s)	51, 154, 299
BceAI	ACGGC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	37, 99, 346
BmsI	GCATC	2 cut(s)	88, 327
BpiI	GAAGAC	1 cut(s)	199
BsaHI	GRCGYC	2 cut(s)	225, 297
BsaJI	CCNNGG	3 cut(s)	102, 211, 274
BsaWI	WCCGGW	2 cut(s)	82, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 354
Bse3DI	GCAATG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	102, 211, 274
BseGI	GGATG	3 cut(s)	79, 113, 318
BseLI	CCNNNNNNNGG	2 cut(s)	82, 354
BseMI	GCAATG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	38, 100, 164, 347
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	22, 83, 136
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	82, 354
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	38, 100, 164, 347
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	8, 336
BspACI	CCGC	3 cut(s)	68, 149, 366
BspANI	GGCC	4 cut(s)	38, 100, 164, 347
BspFNI	CGCG	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	84
BspQI	GCTCTTC	3 cut(s)	32, 66, 158
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	102, 211, 274
BssMI	GATC	2 cut(s)	8, 336
BssNI	GRCGYC	2 cut(s)	225, 297
Bst6I	CTCTTC	4 cut(s)	32, 66, 158, 200
BstACI	GRCGYC	2 cut(s)	225, 297
BstF5I	GGATG	3 cut(s)	79, 113, 318
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	11, 339
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	8, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	38, 100, 164, 347
BtsCI	GGATG	3 cut(s)	79, 113, 318
BveI	ACCTGC	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	37, 99, 346
CseI	GACGC	2 cut(s)	13, 286
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	7 cut(s)	25, 38, 100, 107, 164, 347, 385
CviKI_1	RGCY	7 cut(s)	25, 38, 100, 107, 164, 347, 385
DpnI	GATC	2 cut(s)	10, 338
DpnII	GATC	2 cut(s)	8, 336
Eam1104I	CTCTTC	4 cut(s)	32, 66, 158, 200
EarI	CTCTTC	4 cut(s)	32, 66, 158, 200
EciI	GGCGGA	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	37, 99
EcoRI	GAATTC	1 cut(s)	391
FaeI	CATG	1 cut(s)	326
FaiI	YATR	4 cut(s)	168, 284, 324, 402
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	373
FokI	GGATG	3 cut(s)	66, 100, 305
HaeIII	GGCC	4 cut(s)	38, 100, 164, 347
HapII	CCGG	3 cut(s)	22, 83, 136
HgaI	GACGC	2 cut(s)	13, 286
Hin1I	GRCGYC	2 cut(s)	225, 297
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	3 cut(s)	22, 83, 136
HphI	GGTGA	6 cut(s)	38, 65, 97, 227, 298, 389
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	175, 315
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	4 cut(s)	35, 227, 230, 302
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	2 cut(s)	225, 297
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	8, 336
LguI	GCTCTTC	3 cut(s)	32, 66, 158
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	4 cut(s)	35, 89, 96, 149
LweI	GCATC	2 cut(s)	88, 327
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	10, 338
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	2 cut(s)	8, 336
MboII	GAAGA	6 cut(s)	19, 53, 102, 145, 187, 199
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	391, 403
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	2 cut(s)	153, 261
MnlI	CCTC	9 cut(s)	28, 50, 75, 81, 112, 203, 221, 251, 284
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	3 cut(s)	22, 83, 136
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	8, 336
NlaIII	CATG	1 cut(s)	326
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	84
PciSI	GCTCTTC	3 cut(s)	32, 66, 158
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 219
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	37, 99, 346
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	3 cut(s)	32, 66, 158
Sau3AI	GATC	2 cut(s)	8, 336
Sau96I	GGNCC	3 cut(s)	37, 99, 346
SchI	GAGTC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	78, 173, 195, 228, 243, 276, 379
SfaNI	GCATC	2 cut(s)	88, 327
SfcI	CTRYAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	391, 403
SsiI	CCGC	3 cut(s)	68, 149, 366
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	5 cut(s)	30, 123, 156, 222, 300
TasI	AATT	2 cut(s)	391, 403
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	102, 244, 389
XapI	RAATTY	1 cut(s)	391
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.