Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006269.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

117012 .. 117263

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006269.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgagcactgattctccagcgacgacgacaaggcccacgaccacttcatctccaaccggaaggtctctccagctcttcgacatggccaacaagtcaaacaacgactaccacttcaaggtcgtcttgatcggccattctggtatcagcaaatcagatttgttgtctaggttcatgcgcaatgagttcaacctcgagtctaagtccaccatcggtgtcgagtttgccacccggagcatccacgtcgatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000212 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000922 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005768 GO:0005794 GO:0005802 GO:0005819 GO:0005856 GO:0005933 GO:0005935 GO:0005938 GO:0006810 GO:0006886 GO:0006887 GO:0006996 GO:0007010 GO:0007017 GO:0007033 GO:0007049 GO:0007051 GO:0007107 GO:0007154 GO:0007165 GO:0007264 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010720 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019867 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030427 GO:0031023 GO:0031090 GO:0031410 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031982 GO:0031984 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0032940 GO:0033036 GO:0033365 GO:0034306 GO:0034307 GO:0034498 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0042144 GO:0042147 GO:0042173 GO:0042763 GO:0042764 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043937 GO:0043938 GO:0043940 GO:0043941 GO:0044087 GO:0044089 GO:0044380 GO:0044422 GO:0044424 GO:0044429 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0045595 GO:0045597 GO:0045787 GO:0045881 GO:0045921 GO:0046903 GO:0046907 GO:0048193 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051300 GO:0051301 GO:0051321 GO:0051445 GO:0051446 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055037 GO:0060284 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061796 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071988 GO:0072687 GO:0072697 GO:0072698 GO:0075296 GO:0090068 GO:0090619 GO:0090726 GO:0097159 GO:0097367 GO:0097576 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099568 GO:1901265 GO:1901363 GO:1902410 GO:1902441 GO:1903023 GO:1903024 GO:1903046 GO:1903047 GO:1903530 GO:1903532 GO:1905508 GO:1990151 GO:1990395 GO:1990778 GO:1990896 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

83

Amino Acids

9.2

Weight (kDa)

6.82

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AcoI	YGGCCR	2 cut(s)	84, 130
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	115, 187
AjiI	CACGTC	1 cut(s)	241
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	32, 84, 130
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	34, 86, 132
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	57, 229
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	34, 86, 132
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	34, 86, 132
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	184
BssMI	GATC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	34, 86, 132
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	6
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	82, 172
CviJI	RGCY	4 cut(s)	34, 73, 86, 132
CviKI_1	RGCY	4 cut(s)	34, 73, 86, 132
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	2 cut(s)	84, 130
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	191
FaeI	CATG	2 cut(s)	85, 175
FaiI	YATR	2 cut(s)	83, 173
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	81, 171
FokI	GGATG	1 cut(s)	221
FspBI	CTAG	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	34, 86, 132
HapII	CCGG	2 cut(s)	57, 229
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	85, 175
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	11, 194
HpaII	CCGG	2 cut(s)	57, 229
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	3 cut(s)	25, 28, 245
HpyAV	CCTTC	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	85, 175
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	5 cut(s)	30, 70, 83, 123, 242
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	240
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	57, 229
MspR9I	CCNGG	1 cut(s)	229
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	85, 175
NsbI	TGCGCA	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	65, 75, 120, 170, 192, 243
SfaNI	GCATC	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	78, 192, 216, 243
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	36, 160
TspRI	CASTG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.