Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004126.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

39858 .. 41531

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004126.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgttcccaaaacgtcccttaagggcatcccacagttctttgcactactacataaaaggcttcacacgacacctctcagaagaccggtctggctccaaagctgatccctctccaaagctaaaccccactctccctttctctccccccacaaaattccaaaaccctctcccaagcccacttcgagaccaagaaacccagacccaattggcggacgacgaagccggaggcgaggagtacttgttcaaggtggtcctcattggcgactccaccgtcagcaagtcaaacctgctctcgcgcttcgctaggaacgattttgatcaaaactccaaggccacaattggggtcgagtttcggacccaggccatggaaatcgacggcaaagaggtcaaggcccagatctgggacatggagggacaagagcgcttccaggctgtcgcgtcggcttactacttaggcacggtgggtgcgcttgtagtgtatgatattagtaggaagaccacttttgagagtgtggagcgctggcttaatgagcttaccagtaagttttttgggtaccattttgttgttgttgcttgtttaaatggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

196

Amino Acids

22.11

Weight (kDa)

6.43

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccII	CGCG	2 cut(s)	295, 437
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	2 cut(s)	236, 554
AfeI	AGCGCT	2 cut(s)	422, 518
AfiI	CCNNNNNNNGG	5 cut(s)	208, 339, 364, 399, 400
AflII	CTTAAG	1 cut(s)	19
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	357, 426
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	101, 118, 532
AluI	AGCT	3 cut(s)	101, 118, 532
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	98
Aor51HI	AGCGCT	2 cut(s)	422, 518
AoxI	GGCC	3 cut(s)	330, 360, 390
ApoI	RAATTY	1 cut(s)	152
AsiGI	ACCGGT	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	552
AspLEI	GCGC	4 cut(s)	297, 423, 469, 519
AspS9I	GGNCC	3 cut(s)	250, 354, 391
AvaII	GGWCC	2 cut(s)	250, 354
BanI	GGYRCC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	87, 500
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	359, 428
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	2 cut(s)	424, 520
BfrI	CTTAAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	294
BglII	AGATCT	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	359, 428
Bme18I	GGWCC	2 cut(s)	250, 354
BmgT120I	GGNCC	3 cut(s)	250, 354, 391
BmiI	GGNNCC	3 cut(s)	94, 356, 554
BmrFI	CCNGG	2 cut(s)	359, 428
BmsI	GCATC	1 cut(s)	35
BpiI	GAAGAC	2 cut(s)	87, 500
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	327, 357, 363
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 339, 364, 399, 400
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	359, 428
BseDI	CCNNGG	3 cut(s)	327, 357, 363
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	5 cut(s)	208, 339, 364, 399, 400
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	295, 437
BshFI	GGCC	3 cut(s)	332, 362, 392
BshNI	GGYRCC	1 cut(s)	552
BshTI	ACCGGT	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	85, 222
BslFI	GGGAC	2 cut(s)	416, 426
BslI	CCNNNNNNNGG	5 cut(s)	208, 339, 364, 399, 400
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	416, 426
BsnI	GGCC	3 cut(s)	332, 362, 392
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	103, 316, 396
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	3 cut(s)	332, 362, 392
BspCNI	CTCAG	1 cut(s)	89
BspFNI	CGCG	2 cut(s)	295, 437
BspLI	GGNNCC	3 cut(s)	94, 356, 554
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	327, 357, 363
BssMI	GATC	3 cut(s)	103, 316, 396
BssT1I	CCWWGG	2 cut(s)	327, 363
Bst2UI	CCWGG	2 cut(s)	359, 428
Bst4CI	ACNGT	3 cut(s)	35, 271, 460
BstAFI	CTTAAG	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	76, 451
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	2 cut(s)	295, 437
BstH2I	RGCGCY	2 cut(s)	424, 520
BstHHI	GCGC	4 cut(s)	297, 423, 469, 519
BstKTI	GATC	3 cut(s)	106, 319, 399
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	103, 316, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNI	CCWGG	2 cut(s)	359, 428
BstSCI	CCNGG	2 cut(s)	357, 426
BstUI	CGCG	2 cut(s)	295, 437
BstV2I	GAAGAC	2 cut(s)	87, 500
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	332, 362, 392
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	521
CfoI	GCGC	4 cut(s)	297, 423, 469, 519
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	250, 354, 391
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	235, 553
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	2 cut(s)	364, 406
CviQI	GTAC	2 cut(s)	235, 553
DdeI	CTNAG	2 cut(s)	76, 451
DpnI	GATC	3 cut(s)	105, 318, 398
DpnII	GATC	3 cut(s)	103, 316, 396
DraI	TTTAAA	1 cut(s)	579
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	327, 363
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	250, 354
Eco47III	AGCGCT	2 cut(s)	422, 518
EcoRII	CCWGG	2 cut(s)	357, 426
EcoT14I	CCWWGG	2 cut(s)	327, 363
ErhI	CCWWGG	2 cut(s)	327, 363
FaeI	CATG	2 cut(s)	367, 409
FaiI	YATR	4 cut(s)	53, 365, 407, 480
FaqI	GGGAC	2 cut(s)	416, 426
FatI	CATG	2 cut(s)	363, 405
FbaI	TGATCA	1 cut(s)	316
FokI	GGATG	1 cut(s)	13
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	4 cut(s)	296, 422, 468, 518
HaeII	RGCGCY	2 cut(s)	424, 520
HaeIII	GGCC	3 cut(s)	332, 362, 392
HapII	CCGG	2 cut(s)	85, 222
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	4 cut(s)	297, 423, 469, 519
Hin1II	CATG	2 cut(s)	367, 409
Hin6I	GCGC	4 cut(s)	295, 421, 467, 517
HinP1I	GCGC	4 cut(s)	295, 421, 467, 517
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	85, 222
Hpy188I	TCNGA	2 cut(s)	79, 354
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	3 cut(s)	218, 377, 442
HpyCH4III	ACNGT	3 cut(s)	35, 271, 460
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	2 cut(s)	76, 451
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	367, 409
HspAI	GCGC	4 cut(s)	295, 421, 467, 517
KpnI	GGTACC	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	103, 316, 396
LmnI	GCTCC	2 cut(s)	98, 514
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	13
MalI	GATC	3 cut(s)	105, 318, 398
MboI	GATC	3 cut(s)	103, 316, 396
MboII	GAAGA	2 cut(s)	92, 505
MfeI	CAATTG	2 cut(s)	203, 336
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	3 cut(s)	152, 203, 336
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	8 cut(s)	83, 118, 174, 218, 223, 263, 376, 403
MseI	TTAA	3 cut(s)	20, 525, 578
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	2 cut(s)	85, 222
MspR9I	CCNGG	2 cut(s)	359, 428
MunI	CAATTG	2 cut(s)	203, 336
MvaI	CCWGG	2 cut(s)	359, 428
MvnI	CGCG	2 cut(s)	295, 437
MwoI	GCNNNNNNNGC	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	103, 316, 396
NlaIII	CATG	2 cut(s)	367, 409
NlaIV	GGNNCC	3 cut(s)	94, 356, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	364
PinAI	ACCGGT	1 cut(s)	84
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	357, 426
PspGI	CCWGG	2 cut(s)	357, 426
PspN4I	GGNNCC	3 cut(s)	94, 356, 554
PspPI	GGNCC	3 cut(s)	250, 354, 391
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	2 cut(s)	236, 554
RsaNI	GTAC	2 cut(s)	235, 553
SaqAI	TTAA	3 cut(s)	20, 525, 578
Sau3AI	GATC	3 cut(s)	103, 316, 396
Sau96I	GGNCC	3 cut(s)	250, 354, 391
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	359, 428
SetI	ASST	8 cut(s)	16, 75, 103, 120, 249, 288, 387, 534
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	250, 354
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	152, 203, 336
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	357, 426
StyI	CCWWGG	2 cut(s)	327, 363
TaaI	ACNGT	3 cut(s)	35, 271, 460
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	181, 345, 372
TasI	AATT	3 cut(s)	152, 203, 336
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	3 cut(s)	20, 525, 578
Tru9I	TTAA	3 cut(s)	20, 525, 578
Van91I	CCANNNNNTGG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	250, 354
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.