Rh7BG271500

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001046
Physical Location & Seq
Forward (+)
24942970 .. 24953512
10543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG271500.1

Sequence Viewer

Length: 609 bp
ATGCTTGTCGAGTCTTTTAGCTTATCAGGGATTAAGATCCGAGCTGGAGATCACTTTCTATCTTCTGAGTTTGAGAGAGAATTGACATATGATTGTGGTTGCAGGTCCAAGAAGAGTGGCAAGGGAAAGAGGCCTGGAAAGGGAGGCAAATCAGGCAATCGCTTCTGGAAGAGCGCTGGGCTCGGCTTTAAGACTCCCAGAGATGCTATTGATTTATTGAAGCTTGTGTTTTCTCGGACATTTTACATATTTGAATACTTGATGGCAACCTCATCGGATTCAAGTCATACAGTCAGTTCTCATTATGATGGTGATAATGATGAAATTGTTGCTGTTGGGAATGATGCAATTGCTGTGTCTCAGCAAGATGTAGCAAAGGGAAAAGCAGTTGTTGTTGAAAGTGATGAAGAAGAACCAATTGCCAAAACTGGAACCTCAAGCTCAAAGTCTGCAAAAGTTTCCAAAAGAGCTGCAGCTGCAATTCCTTCAACAAGTGCCGCTGTTGGGACCTCAAAATCTTCAAAAGCAGCAAAACAAGGGCTGCTGCCACCAAGAAAAGCTAAAGCCTTGCTGGCTTACTGCACAGCAGCTCATGATGTAGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17_N

Protein Analysis

202

Amino Acids

21.41

Weight (kDa)

9.27

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 600
AciI CCGC 1 cut(s) 498
AclWI GGATC 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 2 cut(s) 140, 504
AgsI TTSAA 6 cut(s) 220, 254, 282, 398, 489, 522
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 8 cut(s) 21, 44, 223, 441, 470, 476, 560, 590
AluI AGCT 8 cut(s) 21, 44, 223, 441, 470, 476, 560, 590
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 1 cut(s) 31
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 7 cut(s) 470, 473, 476, 527, 541, 544, 587
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 105, 507
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 2 cut(s) 105, 507
BanII GRGCYC 1 cut(s) 183
BbvI GCAGC 7 cut(s) 457, 463, 485, 528, 531, 539, 599
BccI CCATC 2 cut(s) 256, 302
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 572
BisI GCNGC 8 cut(s) 471, 474, 477, 498, 528, 542, 545, 588
BlsI GCNGC 8 cut(s) 472, 475, 478, 499, 529, 543, 546, 589
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 105, 507
BmgT120I GGNCC 2 cut(s) 105, 507
BmiI GGNNCC 2 cut(s) 433, 508
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 193, 334
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 504
Bse1I ACTGG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 140, 504
BseMII CTCAG 2 cut(s) 57, 374
BseNI ACTGG 1 cut(s) 433
BseXI GCAGC 7 cut(s) 457, 463, 485, 528, 531, 539, 599
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 140, 504
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 36, 49
BspACI CCGC 1 cut(s) 498
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 58, 373
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 2 cut(s) 433, 508
BspMAI CTGCAG 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 93
BspPI GGATC 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 433
BssMI GATC 2 cut(s) 36, 49
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 2 cut(s) 107, 164
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 66, 360
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 39, 52
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 2 cut(s) 36, 49
BstMWI GCNNNNNNNGC 3 cut(s) 153, 476, 572
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 7 cut(s) 457, 463, 485, 528, 531, 539, 599
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 133
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 592
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 105, 507
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 1 cut(s) 593
DdeI CTNAG 2 cut(s) 66, 360
DpnI GATC 2 cut(s) 38, 51
DpnII GATC 2 cut(s) 36, 49
Eam1104I CTCTTC 2 cut(s) 107, 164
EarI CTCTTC 2 cut(s) 107, 164
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 105, 507
Eco47III AGCGCT 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 1 cut(s) 596
FaiI YATR 6 cut(s) 88, 90, 248, 288, 306, 594
FaqI GGGAC 1 cut(s) 520
FatI CATG 1 cut(s) 592
FauNDI CATATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 8 cut(s) 471, 474, 477, 498, 528, 542, 545, 588
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 8 cut(s) 471, 474, 477, 498, 528, 542, 545, 588
GlaI GCGC 1 cut(s) 175
GluI GCNGC 8 cut(s) 471, 474, 477, 498, 528, 542, 545, 588
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 133
HhaI GCGC 1 cut(s) 176
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 11, 193, 278
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 4 cut(s) 41, 67, 237, 277
Hpy188III TCNNGA 2 cut(s) 166, 593
Hpy8I GTNNAC 1 cut(s) 601
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 102, 347, 452, 473, 479, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 476, 572
HpyF3I CTNAG 2 cut(s) 66, 360
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 36, 49
LguI GCTCTTC 1 cut(s) 164
Lsp1109I GCAGC 7 cut(s) 457, 463, 485, 528, 531, 539, 599
LweI GCATC 2 cut(s) 193, 334
MalI GATC 2 cut(s) 38, 51
MboI GATC 2 cut(s) 36, 49
MboII GAAGA 6 cut(s) 54, 124, 181, 419, 422, 510
MfeI CAATTG 2 cut(s) 348, 417
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 80, 324, 348, 417, 480
MlyI GAGTC 2 cut(s) 20, 187
MnlI CCTC 5 cut(s) 123, 137, 280, 445, 520
MseI TTAA 2 cut(s) 33, 189
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 476, 500
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 2 cut(s) 348, 417
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 153, 476, 572
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 36, 49
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 2 cut(s) 433, 508
NmeAIII GCCGAG 1 cut(s) 162
PagI TCATGA 1 cut(s) 592
PceI AGGCCT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 8 cut(s) 472, 475, 478, 499, 529, 543, 546, 589
PleI GAGTC 2 cut(s) 19, 187
PpsI GAGTC 2 cut(s) 19, 187
PpuMI RGGWCCY 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 433, 508
PspPI GGNCC 2 cut(s) 105, 507
PspPPI RGGWCCY 1 cut(s) 507
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 33, 189
SatI GCNGC 8 cut(s) 471, 474, 477, 498, 528, 542, 545, 588
Sau3AI GATC 2 cut(s) 36, 49
Sau96I GGNCC 2 cut(s) 105, 507
SchI GAGTC 2 cut(s) 20, 187
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 2 cut(s) 193, 334
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 2 cut(s) 105, 507
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 5 cut(s) 80, 324, 348, 417, 480
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 1 cut(s) 498
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 9
TasI AATT 5 cut(s) 80, 324, 348, 417, 480
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 33, 189
Tru9I TTAA 2 cut(s) 33, 189
TseI GCWGC 7 cut(s) 470, 473, 476, 527, 541, 544, 587
TspDTI ATGAA 2 cut(s) 336, 420
VpaK11BI GGWCC 2 cut(s) 105, 507
XmiI GTMKAC 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.