Rroxscaffold_4G00292780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001046
Physical Location & Seq
Reverse (-)
13006738 .. 13011424
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292780.1

Sequence Viewer

Length: 285 bp
ATGATTCTAACTCGACCTTCCGCAACAGTTACTGGGCAAGAGAAAGATCCGGCTGCACGAGAGAAAAAGAAAGAGAAAGATCGCGCGCACGAGCTTCAAGCCTTCAACAATGACGACGAGTCAACGATAGTCCCGACCTCCGAGGAAGATCCGGCTCGGCCGTCGTCCGATACGCCTCCGAGCAAGCACAGGCGTACGCCGCCCCGAGATGTAGCAAAGGGAAAAGCGATAGCTGCTGAAAGTGATGAAGGAGAACCAACGCCAAAGTTGGAACCTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.28

Weight (kDa)

5.41

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 84, 86
AciI CCGC 2 cut(s) 21, 200
AclWI GGATC 2 cut(s) 41, 143
AcoI YGGCCR 1 cut(s) 158
AfaI GTAC 1 cut(s) 196
AgsI TTSAA 2 cut(s) 98, 106
AhdI GACNNNNNGTC 1 cut(s) 118
AluBI AGCT 3 cut(s) 94, 233, 281
AluI AGCT 3 cut(s) 94, 233, 281
AlwI GGATC 2 cut(s) 41, 143
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 53, 233
AspLEI GCGC 2 cut(s) 86, 88
AvaI CYCGRG 1 cut(s) 204
BauI CACGAG 2 cut(s) 57, 89
BbvI GCAGC 2 cut(s) 40, 220
BceAI ACGGC 1 cut(s) 145
BisI GCNGC 3 cut(s) 54, 200, 234
BlsI GCNGC 3 cut(s) 55, 201, 235
BmeRI GACNNNNNGTC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 37
BsePI GCGCGC 1 cut(s) 84
BseX3I CGGCCG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 40, 220
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 84, 86
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 50, 152
BsiWI CGTACG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 3 cut(s) 46, 79, 148
BspACI CCGC 2 cut(s) 21, 200
BspANI GGCC 1 cut(s) 160
BspFNI CGCG 2 cut(s) 84, 86
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 41, 143
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 141
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 3 cut(s) 46, 79, 148
BssSI CACGAG 2 cut(s) 57, 89
Bst2BI CACGAG 2 cut(s) 57, 89
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 86, 185
BstFNI CGCG 2 cut(s) 84, 86
BstHHI GCGC 2 cut(s) 86, 88
BstKTI GATC 3 cut(s) 49, 82, 151
BstMBI GATC 3 cut(s) 46, 79, 148
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 199, 233
BstUI CGCG 2 cut(s) 84, 86
BstV1I GCAGC 2 cut(s) 40, 220
BstX2I RGATCY 2 cut(s) 46, 148
BstYI RGATCY 2 cut(s) 46, 148
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 86, 185
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 86, 88
Csp6I GTAC 1 cut(s) 195
CviJI RGCY 7 cut(s) 53, 94, 101, 155, 160, 233, 281
CviKI_1 RGCY 7 cut(s) 53, 94, 101, 155, 160, 233, 281
CviQI GTAC 1 cut(s) 195
DpnI GATC 3 cut(s) 48, 81, 150
DpnII GATC 3 cut(s) 46, 79, 148
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 158
EagI CGGCCG 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 204
FaqI GGGAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 54, 200, 234
Fsp4HI GCNGC 3 cut(s) 54, 200, 234
GlaI GCGC 2 cut(s) 85, 87
GluI GCNGC 3 cut(s) 54, 200, 234
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 50, 152
HhaI GCGC 2 cut(s) 86, 88
Hin6I GCGC 2 cut(s) 84, 86
HinP1I GCGC 2 cut(s) 84, 86
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 2 cut(s) 4, 119
HpaII CCGG 2 cut(s) 50, 152
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 142, 169, 180
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 2 cut(s) 119, 166
HpyAV CCTTC 3 cut(s) 27, 112, 242
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 233
HspAI GCGC 2 cut(s) 84, 86
Kzo9I GATC 3 cut(s) 46, 79, 148
LpnPI CCDG 4 cut(s) 18, 63, 165, 175
Lsp1109I GCAGC 2 cut(s) 40, 220
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 48, 81, 150
MboI GATC 3 cut(s) 46, 79, 148
MboII GAAGA 1 cut(s) 158
MflI RGATCY 2 cut(s) 46, 148
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 136, 148, 186, 285
MseI TTAA 1 cut(s) 283
MspI CCGG 2 cut(s) 50, 152
MvnI CGCG 2 cut(s) 84, 86
MwoI GCNNNNNNNGC 2 cut(s) 199, 233
NdeII GATC 3 cut(s) 46, 79, 148
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 1 cut(s) 136
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 194
PkrI GCNGC 3 cut(s) 55, 201, 235
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PspLI CGTACG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 273
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 2 cut(s) 46, 148
PteI GCGCGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 3 cut(s) 54, 200, 234
Sau3AI GATC 3 cut(s) 46, 79, 148
SchI GAGTC 1 cut(s) 128
SetI ASST 6 cut(s) 19, 96, 140, 235, 277, 283
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SsiI CCGC 2 cut(s) 21, 200
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 13
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseI GCWGC 2 cut(s) 53, 233
TspDTI ATGAA 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.