Rh5BG436600

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001046
Physical Location & Seq
Reverse (-)
70334078 .. 70346207
12130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG436600.1

Sequence Viewer

Length: 711 bp
ATGGTTGTACTTGCAGATCGATTGGAGTACTTGCTGATCGATCGGATTCCTATTCAAATGGTTGTACTCAAGGAGGCGTCTGGTTCTGCAGGATCAAATTCGGATCCTCTTAGTTCGAATCAGATCACTGCCAGAGACTCCGACTCTTCGACGAGGCCCTCCACCACCAATATCGCCTCTTCCTCGGCCTTACCTGCATCCGGTGACAACGACAAGGCCCTCGGCTTCTTCATCCCCAATCGAAAATCCCAACCGGAAAGTCTCTCCGGCTCTTCGAGATGGCCTATAGGTCAGACGGCGACTACGACTAACTCTTCAAGTTCGTCTTCCTCGGTGATTCCGGCGACATCAAATCCAACCTCTTGTCCAGGTTCATTTCGCAACGAGTTCAACCTCGAGTCTATATCCACCATCCATGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGACACCACCGGCCAAGAAAGGGGAGAGAAAAAGAGTTGTGCTCTTCCTCTATCAACATCAGTCGCTCCATTCCAATTTCAGTTCGACAAGCCACTAACTTTACAGAGTGGAATCACGAGAAAGAAGGAGAAGAAGGATCTGGGTCTGGGTTTGTTTTGGATTGTGCATGACACCATACATCTTGAGTTCATAAATACTACCGGAGTAAATGCAATGGCAACCCCTGAAGCCCGAAGACACCCTATGAAGTTTTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

236

Amino Acids

25.52

Weight (kDa)

7.8

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AclWI GGATC 4 cut(s) 98, 100, 111, 594
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 3 cut(s) 9, 29, 66
AfiI CCNNNNNNNGG 4 cut(s) 200, 447, 448, 469
AgsI TTSAA 3 cut(s) 56, 318, 391
AjnI CCWGG 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 129, 266
AlwI GGATC 4 cut(s) 98, 100, 111, 594
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 6 cut(s) 155, 186, 216, 281, 438, 460
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 3 cut(s) 156, 217, 439
AsuHPI GGTGA 2 cut(s) 215, 346
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 395
BamHI GGATCC 1 cut(s) 103
BauI CACGAG 1 cut(s) 565
BbsI GAAGAC 2 cut(s) 318, 691
Bbv12I GWGCWC 1 cut(s) 493
BccI CCATC 2 cut(s) 273, 419
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 129, 266
BfmI CTRYAG 2 cut(s) 87, 285
BfuAI ACCTGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 156, 217, 439
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 318, 691
BplI GAGNNNNNCTC 2 cut(s) 475, 507
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 53, 653
Bsa29I ATCGAT 2 cut(s) 19, 39
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 183, 220, 330
BsaWI WCCGGW 3 cut(s) 200, 253, 650
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 447, 448, 469
Bse118I RCCGGY 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 2 cut(s) 19, 39
BseDI CCNNGG 3 cut(s) 183, 220, 330
BseGI GGATG 3 cut(s) 197, 231, 411
BseLI CCNNNNNNNGG 4 cut(s) 200, 447, 448, 469
BseMI GCAATG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 6 cut(s) 157, 188, 218, 283, 440, 462
BshVI ATCGAT 2 cut(s) 19, 39
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 6 cut(s) 201, 254, 267, 341, 459, 651
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 4 cut(s) 200, 447, 448, 469
BsmAI GTCTC 2 cut(s) 129, 266
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 6 cut(s) 157, 188, 218, 283, 440, 462
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
BspANI GGCC 6 cut(s) 157, 188, 218, 283, 440, 462
BspDI ATCGAT 2 cut(s) 19, 39
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 4 cut(s) 98, 100, 111, 594
BspQI GCTCTTC 2 cut(s) 277, 498
BspT104I TTCGAA 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 183, 220, 330
BssMI GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 369
Bst6I CTCTTC 5 cut(s) 151, 184, 277, 319, 498
BstACI GRCGYC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 197, 231, 411
BstKTI GATC 8 cut(s) 19, 39, 43, 95, 106, 126, 432, 589
BstMAI GTCTC 2 cut(s) 129, 266
BstMBI GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 2 cut(s) 87, 285
BstV2I GAAGAC 2 cut(s) 318, 691
BstX2I RGATCY 2 cut(s) 103, 586
BstYI RGATCY 2 cut(s) 103, 586
Bsu15I ATCGAT 2 cut(s) 19, 39
BsuRI GGCC 6 cut(s) 157, 188, 218, 283, 440, 462
BsuTUI ATCGAT 2 cut(s) 19, 39
BtsCI GGATG 3 cut(s) 197, 231, 411
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 3 cut(s) 156, 217, 439
ClaI ATCGAT 2 cut(s) 19, 39
CseI GACGC 1 cut(s) 66
Csp6I GTAC 3 cut(s) 8, 28, 65
CviAII CATG 2 cut(s) 416, 617
CviQI GTAC 3 cut(s) 8, 28, 65
DdeI CTNAG 1 cut(s) 110
DpnI GATC 8 cut(s) 18, 38, 42, 94, 105, 125, 431, 588
DpnII GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 5 cut(s) 151, 184, 277, 319, 498
EarI CTCTTC 5 cut(s) 151, 184, 277, 319, 498
Eco57I CTGAAG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 156, 217
EcoRII CCWGG 1 cut(s) 367
FaeI CATG 2 cut(s) 419, 620
FaiI YATR 7 cut(s) 287, 404, 417, 618, 626, 641, 695
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 1 cut(s) 464
FatI CATG 2 cut(s) 415, 616
FokI GGATG 3 cut(s) 184, 218, 398
HaeIII GGCC 6 cut(s) 157, 188, 218, 283, 440, 462
HapII CCGG 6 cut(s) 201, 254, 267, 341, 459, 651
HgaI GACGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 419, 620
HinfI GANTC 7 cut(s) 46, 118, 137, 143, 337, 398, 561
HpaII CCGG 6 cut(s) 201, 254, 267, 341, 459, 651
HphI GGTGA 2 cut(s) 215, 346
Hpy188I TCNGA 5 cut(s) 45, 103, 123, 142, 294
Hpy188III TCNNGA 3 cut(s) 276, 565, 632
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 568, 577
HpyCH4V TGCA 5 cut(s) 14, 89, 197, 616, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 419, 620
Kzo9I GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
LguI GCTCTTC 2 cut(s) 277, 498
LmnI GCTCC 1 cut(s) 520
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 203
MalI GATC 8 cut(s) 18, 38, 42, 94, 105, 125, 431, 588
MboI GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
MboII GAAGA 9 cut(s) 138, 171, 220, 264, 306, 318, 485, 592, 696
MflI RGATCY 2 cut(s) 103, 586
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 3 cut(s) 97, 524, 706
MlyI GAGTC 3 cut(s) 131, 137, 407
MmeI TCCRAC 2 cut(s) 165, 380
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 6 cut(s) 201, 254, 267, 341, 459, 651
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
NlaIII CATG 2 cut(s) 419, 620
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 2 cut(s) 164, 201
NmuCI GTSAC 1 cut(s) 203
NspV TTCGAA 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 395
PciSI GCTCTTC 2 cut(s) 277, 498
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PfeI GAWTC 4 cut(s) 46, 118, 337, 561
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 3 cut(s) 131, 137, 406
PpsI GAGTC 3 cut(s) 131, 137, 406
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 3 cut(s) 156, 217, 439
PspXI VCTCGAGB 1 cut(s) 395
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 2 cut(s) 103, 586
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 3 cut(s) 9, 29, 66
RsaNI GTAC 3 cut(s) 8, 28, 65
RseI CAYNNNNRTG 1 cut(s) 420
SapI GCTCTTC 2 cut(s) 277, 498
Sau3AI GATC 8 cut(s) 16, 36, 40, 92, 103, 123, 429, 586
Sau96I GGNCC 3 cut(s) 156, 217, 439
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 3 cut(s) 131, 137, 407
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 493
SetI ASST 5 cut(s) 196, 292, 362, 373, 396
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 2 cut(s) 87, 285
Sfr274I CTCGAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 3 cut(s) 68, 395, 632
SmoI CTYRAG 3 cut(s) 68, 395, 632
Sse9I AATT 3 cut(s) 97, 524, 706
StyD4I CCNGG 1 cut(s) 367
TaqI TCGA 9 cut(s) 19, 39, 116, 149, 241, 275, 396, 420, 534
TasI AATT 3 cut(s) 97, 524, 706
TatI WGTACW 3 cut(s) 7, 27, 64
TfiI GAWTC 4 cut(s) 46, 118, 337, 561
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 220, 363, 628, 710
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.