Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005891.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

73472 .. 75514

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005891.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtcgttgcagccctcacaagctcgccggctacgacttagaggcaaggcgcaaccgaaacaatgtcgttgcagccctcacaagctcaccggctacctcacaatcgccggtcagacagcgactacgactacctcttcaagttcgtcttcctcgatgattctggcgtcggcaaacccaacctcttgtccaggttcatttcgcaacgagttcaacctcgagtctatatccactatcggcgtggagttcgccactcggagcatccatgtcgatgataagatcatcaaggcccagatttgggacaccaccggccaagaaagtttttgtgacctcactggaaatctcaccaacgcagcttttgttgctggtgatagtagcttttgtgatctcgccagagtagcttttgtggtcaccggaagttggccggagactcgccggaggtcggtcggagtcccgctggaagttggctggagacctgccggaggtcggctagagttgactggagacttcgccgaagaggagagagagaatagttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

178

Amino Acids

19.25

Weight (kDa)

7.6

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AciI	CCGC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	307, 419
AcyI	GRCGYC	1 cut(s)	164
AfiI	CCNNNNNNNGG	6 cut(s)	294, 295, 417, 439, 479, 483
AgsI	TTSAA	2 cut(s)	138, 211
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	23, 85, 353, 375, 398
AluI	AGCT	5 cut(s)	23, 85, 353, 375, 398
Alw26I	GTCTC	3 cut(s)	419, 463, 495
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	285, 307, 419
ApeKI	GCWGC	3 cut(s)	10, 72, 350
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	79, 334, 377, 400
AvaI	CYCGRG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	22, 84, 362
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	419, 463, 495
BfaI	CTAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	3 cut(s)	11, 73, 351
BlsI	GCNGC	3 cut(s)	12, 74, 352
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	487, 519
BsaHI	GRCGYC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	6 cut(s)	294, 295, 417, 439, 479, 483
Bse118I	RCCGGY	4 cut(s)	27, 89, 107, 305
Bse1I	ACTGG	2 cut(s)	337, 502
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	6 cut(s)	294, 295, 417, 439, 479, 483
BseNI	ACTGG	2 cut(s)	337, 502
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	3 cut(s)	22, 84, 362
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	287, 309, 421
BsiEI	CGRYCG	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	8 cut(s)	28, 90, 108, 306, 411, 422, 433, 477
BslFI	GGGAC	2 cut(s)	311, 434
BslI	CCNNNNNNNGG	6 cut(s)	294, 295, 417, 439, 479, 483
BsmAI	GTCTC	3 cut(s)	419, 463, 495
BsmFI	GGGAC	2 cut(s)	311, 434
BsnI	GGCC	3 cut(s)	287, 309, 421
Bso31I	GGTCTC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	276, 382
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	287, 309, 421
BspMI	ACCTGC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	463
BsrFI	RCCGGY	4 cut(s)	27, 89, 107, 305
BsrI	ACTGG	2 cut(s)	337, 502
BssAI	RCCGGY	4 cut(s)	27, 89, 107, 305
BssMI	GATC	2 cut(s)	276, 382
BssNI	GRCGYC	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	139, 507
BstACI	GRCGYC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	25, 29
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	279, 385
BstMAI	GTCTC	3 cut(s)	419, 463, 495
BstMBI	GATC	2 cut(s)	276, 382
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 395
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	22, 84, 362
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	287, 309, 421
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	25, 29
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	4 cut(s)	27, 89, 107, 305
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	278, 384
DpnII	GATC	2 cut(s)	276, 382
EaeI	YGGCCR	2 cut(s)	307, 419
Eam1104I	CTCTTC	2 cut(s)	139, 507
EarI	CTCTTC	2 cut(s)	139, 507
Eco31I	GGTCTC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	224, 264
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	311, 434
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	11, 73, 351
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	11, 73, 351
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	11, 73, 351
GsuI	CTGGAG	2 cut(s)	487, 519
HaeIII	GGCC	3 cut(s)	287, 309, 421
HapII	CCGG	8 cut(s)	28, 90, 108, 306, 411, 422, 433, 477
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	4 cut(s)	157, 218, 427, 447
HpaII	CCGG	8 cut(s)	28, 90, 108, 306, 411, 422, 433, 477
HphI	GGTGA	4 cut(s)	79, 334, 377, 400
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	3 cut(s)	114, 255, 446
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	10, 72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 395
HpyF3I	CTNAG	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	276, 382
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	3 cut(s)	22, 84, 362
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	323, 406
MalI	GATC	2 cut(s)	278, 384
MboI	GATC	2 cut(s)	276, 382
MboII	GAAGA	3 cut(s)	126, 138, 524
MlyI	GAGTC	3 cut(s)	227, 421, 456
MmeI	TCCRAC	1 cut(s)	424
MroNI	GCCGGC	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	8 cut(s)	28, 90, 108, 306, 411, 422, 433, 477
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	359, 395
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	276, 382
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	266
NmuCI	GTSAC	2 cut(s)	323, 406
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 149
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	12, 74, 352
PleI	GAGTC	3 cut(s)	226, 421, 455
PpsI	GAGTC	3 cut(s)	226, 421, 455
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	3 cut(s)	11, 73, 351
Sau3AI	GATC	2 cut(s)	276, 382
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	3 cut(s)	227, 421, 456
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	187
TaqI	TCGA	3 cut(s)	152, 216, 267
TaqII	GACCGA	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	323, 406
TseI	GCWGC	3 cut(s)	10, 72, 350
Tsp45I	GTSAC	2 cut(s)	323, 406
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.