Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

23936897 .. 23938566

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTATTTTGATCACTCCCTCCCCATAGTTGCCGCTGAGGTTATCGATCTAAGGCACCAGATCAACTTGACTATTGTGGCTTTCGTTCTATGGCTGAAGACCCAATTGGCGGACGACGAAGCCGGAGGCGAGGAGTACTTGTTCAAGGTGGTCCTCTTCGGCGACTCTACCGTTGGCAAGTCAAACTTGTTCTCGCGCTTCACTAGGAACGAGTTTGATCAAAACTCCAAGGCCACAATTGTGGTCGAGTTTCAGACCCAGGCCATGGAAATCGACGGCAAAGAGGTCAAGGCCCAGATCTGGGACATGGCGGGACAAGAGCGCTTCTGGGCTGTCACGTCGGCTTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

4.66

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	49 - 117	6e-23	Ras family
Roc	PF08477	49 - 117	2.6e-19	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	1 cut(s)	196
AciI	CCGC	3 cut(s)	33, 110, 311
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	137
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	109, 265, 300, 301
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	3 cut(s)	231, 261, 291
AspLEI	GCGC	2 cut(s)	198, 324
AspS9I	GGNCC	2 cut(s)	151, 292
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	10, 217
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	325
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	151, 292
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	228, 258, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 265, 300, 301
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	228, 258, 264
BseLI	CCNNNNNNNGG	4 cut(s)	109, 265, 300, 301
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	233, 263, 293
BshNI	GGYRCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	317, 327
BslI	CCNNNNNNNGG	4 cut(s)	109, 265, 300, 301
BsmFI	GGGAC	2 cut(s)	317, 327
BsnI	GGCC	3 cut(s)	233, 263, 293
Bsp143I	GATC	5 cut(s)	10, 46, 60, 217, 297
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	33, 110, 311
BspANI	GGCC	3 cut(s)	233, 263, 293
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	228, 258, 264
BssMI	GATC	5 cut(s)	10, 46, 60, 217, 297
BssT1I	CCWWGG	2 cut(s)	228, 264
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	36, 50
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	198, 324
BstKTI	GATC	5 cut(s)	13, 49, 63, 220, 300
BstMBI	GATC	5 cut(s)	10, 46, 60, 217, 297
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	233, 263, 293
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	339
CfoI	GCGC	2 cut(s)	198, 324
Cfr13I	GGNCC	2 cut(s)	151, 292
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	265, 307
CviJI	RGCY	8 cut(s)	80, 94, 122, 233, 263, 293, 332, 344
CviKI_1	RGCY	8 cut(s)	80, 94, 122, 233, 263, 293, 332, 344
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	36, 50
DpnI	GATC	5 cut(s)	12, 48, 62, 219, 299
DpnII	GATC	5 cut(s)	10, 46, 60, 217, 297
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	228, 264
Eco47I	GGWCC	1 cut(s)	151
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	228, 264
ErhI	CCWWGG	2 cut(s)	228, 264
FaeI	CATG	2 cut(s)	268, 310
FaiI	YATR	4 cut(s)	26, 91, 266, 308
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	2 cut(s)	317, 327
FatI	CATG	2 cut(s)	264, 306
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	2 cut(s)	10, 217
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	197, 323
GluI	GCNGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	233, 263, 293
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	2 cut(s)	198, 324
Hin1II	CATG	2 cut(s)	268, 310
Hin6I	GCGC	2 cut(s)	196, 322
HinP1I	GCGC	2 cut(s)	196, 322
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	255
Hpy99I	CGWCG	3 cut(s)	119, 278, 343
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	36, 50
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	268, 310
HspAI	GCGC	2 cut(s)	196, 322
Ksp22I	TGATCA	2 cut(s)	10, 217
Kzo9I	GATC	5 cut(s)	10, 46, 60, 217, 297
LpnPI	CCDG	7 cut(s)	71, 136, 245, 272, 286, 308, 313
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	5 cut(s)	12, 48, 62, 219, 299
MboI	GATC	5 cut(s)	10, 46, 60, 217, 297
MboII	GAAGA	2 cut(s)	109, 148
MfeI	CAATTG	2 cut(s)	104, 237
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	2 cut(s)	104, 237
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	29, 31, 119, 124, 164, 277
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	104, 237
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	10, 46, 60, 217, 297
NlaIII	CATG	2 cut(s)	268, 310
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	151, 292
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	5 cut(s)	10, 46, 60, 217, 297
Sau96I	GGNCC	2 cut(s)	151, 292
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	4 cut(s)	42, 150, 288, 341
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	104, 237
SsiI	CCGC	3 cut(s)	33, 110, 311
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	2 cut(s)	228, 264
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	45, 246, 273
TasI	AATT	2 cut(s)	104, 237
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	151
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.