Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006185.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

53899 .. 55279

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006185.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgtacaccaaggtggtcttgattggctactccggcgtcggcaagtccaatctcatctccaggttcaccaagaacgagttcaaccgcgagtccaagtccaccattgttgtcgagttcgctggccaaatcgatgtcgcaaagggaaaagcagttgctgctgaaagtgatgaagaagaaccaactgccaaagctggaacctcaagctcaaagtctgcaaaagtctccaaaagagctgcagctgcaactccttcaacaagtgccgctgctgggacctcaaaatctacaaaaccaccaaaacaagggctgctaccaccaagaaaagctaaaggtcaagcagcaaaatgcagcagcgctgcaaagattgactggaaccggaaacccgaaaaaaagacctgttttgtcccggtccgggtttatccttgtccctgttatctgcaacaacgatctcggcccgaagtaagattttcggtccctgttccggtccgggtccctgtaaaacaattaccggtctgggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04962 map04144 map04152 map04962

Pfam Domains

Protein Families

Ras

Protein Analysis

172

Amino Acids

18.47

Weight (kDa)

10.12

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AciI	CCGC	2 cut(s)	85, 261
AcoI	YGGCCR	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	4 cut(s)	267, 299, 409, 478
AgeI	ACCGGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	82, 252
AjnI	CCWGG	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	191, 204, 233, 239, 323
AluI	AGCT	5 cut(s)	191, 204, 233, 239, 323
Alw26I	GTCTC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	2 cut(s)	121, 449
AsiGI	ACCGGT	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	6 cut(s)	270, 406, 450, 469, 481, 487
AsuC2I	CCSGG	3 cut(s)	404, 410, 485
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	5 cut(s)	270, 406, 469, 481, 487
BalI	TGGCCA	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	61
BcnI	CCSGG	3 cut(s)	404, 410, 485
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	354
Bme1390I	CCNGG	4 cut(s)	61, 404, 410, 485
Bme18I	GGWCC	5 cut(s)	270, 406, 469, 481, 487
BmgT120I	GGNCC	6 cut(s)	270, 406, 450, 469, 481, 487
BmiI	GGNNCC	6 cut(s)	196, 271, 371, 471, 488, 489
BmrFI	CCNGG	4 cut(s)	61, 404, 410, 485
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	3 cut(s)	404, 410, 485
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	3 cut(s)	372, 478, 505
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 299, 409, 478
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	267, 299, 409, 478
BseNI	ACTGG	1 cut(s)	371
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	123, 451
BshTI	ACCGGT	1 cut(s)	505
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	7 cut(s)	33, 373, 404, 409, 479, 484, 506
BslFI	GGGAC	5 cut(s)	283, 386, 408, 455, 473
BslI	CCNNNNNNNGG	4 cut(s)	267, 299, 409, 478
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	5 cut(s)	283, 386, 408, 455, 473
BsnI	GGCC	2 cut(s)	123, 451
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	443
BspACI	CCGC	2 cut(s)	85, 261
BspANI	GGCC	2 cut(s)	123, 451
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	6 cut(s)	196, 271, 371, 471, 488, 489
BspMAI	CTGCAG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	443
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	516
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	446
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	443
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 155, 239
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	59, 402, 408, 483
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	123, 451
BsuTUI	ATCGAT	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	6 cut(s)	270, 406, 450, 469, 481, 487
ClaI	ATCGAT	1 cut(s)	129
CpoI	CGGWCCG	2 cut(s)	406, 481
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	505
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CspI	CGGWCCG	2 cut(s)	406, 481
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	445
DpnII	GATC	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	5 cut(s)	270, 406, 469, 481, 487
Eco47III	AGCGCT	1 cut(s)	352
EcoO109I	RGGNCCY	2 cut(s)	270, 487
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	5 cut(s)	283, 386, 408, 455, 473
GlaI	GCGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	123, 451
HapII	CCGG	7 cut(s)	33, 373, 404, 409, 479, 484, 506
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	7 cut(s)	33, 373, 404, 409, 479, 484, 506
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	6, 66, 99
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	6, 66, 99
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	258
HpyCH4V	TGCA	6 cut(s)	215, 236, 242, 345, 356, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 155, 239
HpyF3I	CTNAG	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	351
KflI	GGGWCCC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	443
MalI	GATC	1 cut(s)	445
MboI	GATC	1 cut(s)	443
MboII	GAAGA	2 cut(s)	182, 185
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	1 cut(s)	500
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	208, 283
Mox20I	TGGCCA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	239, 263
MspI	CCGG	7 cut(s)	33, 373, 404, 409, 479, 484, 506
MspR9I	CCNGG	4 cut(s)	61, 404, 410, 485
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	33, 155, 239
NciI	CCSGG	3 cut(s)	404, 410, 485
NdeII	GATC	1 cut(s)	443
NlaIV	GGNNCC	6 cut(s)	196, 271, 371, 471, 488, 489
NmeAIII	GCCGAG	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	505
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	2 cut(s)	270, 487
Psp5II	RGGWCCY	2 cut(s)	270, 487
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	6 cut(s)	196, 271, 371, 471, 488, 489
PspPI	GGNCC	6 cut(s)	270, 406, 450, 469, 481, 487
PspPPI	RGGWCCY	2 cut(s)	270, 487
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	11
Rsr2I	CGGWCCG	2 cut(s)	406, 481
RsrII	CGGWCCG	2 cut(s)	406, 481
Sau3AI	GATC	1 cut(s)	443
Sau96I	GGNCC	6 cut(s)	270, 406, 450, 469, 481, 487
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	4 cut(s)	61, 404, 410, 485
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	5 cut(s)	270, 406, 469, 481, 487
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	2 cut(s)	85, 261
StyD4I	CCNGG	4 cut(s)	59, 402, 408, 483
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	111, 129
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	1 cut(s)	500
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	183
VpaK11BI	GGWCC	5 cut(s)	270, 406, 469, 481, 487
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.