Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

37050391 .. 37050642

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAGCACTGATTCTCCGGCTACGACGACAAGGCCCGCGACCTCTTCATCTCCAACCGGAAAGTCGCTCCAGCTCTTCGACATGGCCTATAGGTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCCAGTATCGGCAAATCCAATTTGTTGTCCAGGTTCATGCGCAATGAGTTCAACCTCGAGTCTAAGTCCACCATCGGTGTCGAGTTTGCCACCCGGAGCATCCATGTCGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

83

Amino Acids

9.2

Weight (kDa)

6.82

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	39 - 82	2.2e-11	Ras family
Roc	PF08477	39 - 79	8.3e-10	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	115, 187
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	32, 84, 130
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	166, 229
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	166, 229
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	34, 86, 132
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	17, 57, 229
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	3 cut(s)	34, 86, 132
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	3 cut(s)	34, 86, 132
BspFNI	CGCG	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	49, 80
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	164, 227
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	34, 86, 132
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	4 cut(s)	82, 134, 172, 239
CviJI	RGCY	5 cut(s)	20, 34, 73, 86, 132
CviKI_1	RGCY	5 cut(s)	20, 34, 73, 86, 132
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	49, 80
EarI	CTCTTC	2 cut(s)	49, 80
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	4 cut(s)	85, 137, 175, 242
FaiI	YATR	5 cut(s)	83, 90, 135, 173, 240
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	4 cut(s)	81, 133, 171, 238
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	221
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	34, 86, 132
HapII	CCGG	3 cut(s)	17, 57, 229
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	85, 137, 175, 242
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	11, 194
HpaII	CCGG	3 cut(s)	17, 57, 229
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	85, 137, 175, 242
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	72, 231
LpnPI	CCDG	7 cut(s)	30, 70, 83, 151, 151, 178, 242
LweI	GCATC	1 cut(s)	243
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	36, 67
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	52, 200
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	3 cut(s)	17, 57, 229
MspR9I	CCNGG	2 cut(s)	166, 229
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	38
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	85, 137, 175, 242
NsbI	TGCGCA	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	166, 229
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	44, 75, 95, 120, 170, 192
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	164, 227
TaqI	TCGA	4 cut(s)	78, 192, 216, 243
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	36, 160
TspRI	CASTG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.