RLG00000017446

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
16872468 .. 16875947
3480 bp
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UTR
Exon/CDS
Intron
RLM00000017446

Sequence Viewer

Length: 402 bp
ATGCAGCTTGTATTTTCTCGGACATTGTACAGACTTGAATACTTGATGGCAACCTCATTGGATTCAAGTCATGCAGTCAGTTCTCATTATGATGGTGATAATGATGAAATTGTTGTTGTTGGGAATGATGCAAATGATGTGTCTCAGCAAGATGTAGCGACAAAGGGAAAAGCAGTTGTTGTTGAAAGTGATGAAGAAGAACCAACTGCCAAAGCTGGAACCTCAAGCTCAAAGTCTACAAAAGTCTCCAAAAGAGCTGCAGCTGCAACTCCTTCAACAAATGCCGTTGCTGGGACCTCAAAATCTTCAAAAGCAGCAAAACAAGGGCTGCTGCCACCAAGACAAGCTAAAGAAGCAGGTCAAGCAGGTGAAGCAGCCAAGCAGCAGTGCTGCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

13.86

Weight (kDa)

6.11

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 2 cut(s) 347, 356
AccI GTMKAC 1 cut(s) 236
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 5 cut(s) 38, 66, 185, 276, 309
AluBI AGCT 6 cut(s) 7, 215, 228, 257, 263, 347
AluI AGCT 6 cut(s) 7, 215, 228, 257, 263, 347
Alw26I GTCTC 2 cut(s) 147, 250
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 107, 380
AvaII GGWCC 1 cut(s) 294
BccI CCATC 2 cut(s) 40, 86
BceAI ACGGC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 147, 250
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 347, 356
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 220, 295
BmsI GCATC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 290
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 147, 250
BsmFI GGGAC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 220, 295
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 2 cut(s) 347, 356
BsrGI TGTACA 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 147, 250
BstMWI GCNNNNNNNGC 4 cut(s) 263, 353, 362, 371
BstSFI CTRYAG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 392
BveI ACCTGC 2 cut(s) 347, 356
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 71
CviJI RGCY 8 cut(s) 7, 215, 228, 257, 263, 328, 347, 377
CviKI_1 RGCY 8 cut(s) 7, 215, 228, 257, 263, 328, 347, 377
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 294
FaeI CATG 1 cut(s) 74
FaiI YATR 2 cut(s) 72, 90
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 70
FblI GTMKAC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 294
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 62
HphI GGTGA 2 cut(s) 107, 380
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 4, 74, 131, 260, 266, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 353, 362, 371
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 74
LpnPI CCDG 4 cut(s) 201, 276, 342, 351
LweI GCATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 206, 209, 297
MluCI AATT 1 cut(s) 108
MnlI CCTC 3 cut(s) 64, 232, 307
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 263, 353, 362, 371
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 220, 295
PaqCI CACCTGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 220, 295
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 294
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 1 cut(s) 108
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 120, 207
TspRI CASTG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.