Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

6627875 .. 6628617

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAACGGCATCACAACACAACGAGGAGGGCTCATTGAAGATGGCTCTCACAGGACTTCTAAGCTCGATGGGTACGTGAAGAGATTGGAAGATGAACTCAGATTTCTTCCCATTTTCTCCTTCCCCAAAACCCCCCACTGTGCTGCCCTCTCCAATTCCTTCGGTTCCTCCGATCGAACGCTTCGATCGCGTTCTCTCCTCGGTCGATTCGCCTCCGGGTTGTGGAGATCGGAGAGGAGAGAGGGCGGCATGGCGAGTAGAGTAGACCGCGAATACGACGACCTGTTCAAGATCGTGTTGATCGGTGACTCTGGTGTGGGCAAATCTAACATTCTCTCTAGATTTACCAGGAATGAGTTCTGCTTGGAGTCCAAATCCACTATCGGAGTCGAGTTCGCCACCCGAACTCTCCGGGCAAGTTCGCTTTCTGAGTTTAATCTTGGTGTGAGAGTTGATTTGTATTTCAATTGTTTGATTTTGTTCGCAGTGTATGCGGTATTTGTTTGTGATGGATTGGATTCTATGCAGTTTAAATTTCGGGGGTTTCAGTTTGAAATATTTTGGTTGAAGTTTTGTTTGGTGGGCTGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

199

Amino Acids

22.56

Weight (kDa)

9.24

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	97 - 140	3e-11	Ras family
Roc	PF08477	97 - 138	3.5e-10	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	2 cut(s)	190, 270
AciI	CCGC	3 cut(s)	246, 268, 494
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	5 cut(s)	38, 289, 466, 554, 568
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	356
AsuC2I	CCSGG	2 cut(s)	217, 413
AsuHPI	GGTGA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	35, 62, 503
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	217, 413
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	144, 247
BlsI	GCNGC	2 cut(s)	145, 248
Bme1390I	CCNGG	3 cut(s)	217, 349, 413
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	217, 349, 413
BmsI	GCATC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpuMI	CCSGG	2 cut(s)	217, 413
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	112, 420
BseRI	GAGGAG	3 cut(s)	39, 188, 250
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	2 cut(s)	190, 270
Bsh1285I	CGRYCG	3 cut(s)	175, 188, 205
BsiEI	CGRYCG	3 cut(s)	175, 188, 205
BsiSI	CCGG	2 cut(s)	216, 412
BslI	CCNNNNNNNGG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	5 cut(s)	172, 185, 227, 291, 300
BspACI	CCGC	3 cut(s)	246, 268, 494
BspCNI	CTCAG	2 cut(s)	111, 421
BspFNI	CGCG	2 cut(s)	190, 270
BspLI	GGNNCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	172, 185, 227, 291, 300
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	60, 98, 429
BstFNI	CGCG	2 cut(s)	190, 270
BstKTI	GATC	5 cut(s)	175, 188, 230, 294, 303
BstMBI	GATC	5 cut(s)	172, 185, 227, 291, 300
BstMCI	CGRYCG	3 cut(s)	175, 188, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 491
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	215, 347, 411
BstUI	CGCG	2 cut(s)	190, 270
BstV1I	GCAGC	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	136, 492
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	4 cut(s)	31, 45, 64, 585
CviKI_1	RGCY	4 cut(s)	31, 45, 64, 585
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	3 cut(s)	60, 98, 429
DpnI	GATC	5 cut(s)	174, 187, 229, 293, 302
DpnII	GATC	5 cut(s)	172, 185, 227, 291, 300
DraI	TTTAAA	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	251, 492, 524
FatI	CATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	144, 247
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	144, 247
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	144, 247
HapII	CCGG	2 cut(s)	216, 412
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	5 cut(s)	207, 308, 368, 387, 518
HpaII	CCGG	2 cut(s)	216, 412
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	101, 172, 232, 386, 430
Hpy188III	TCNNGA	2 cut(s)	289, 339
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	130, 169
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 491
HpyF3I	CTNAG	3 cut(s)	60, 98, 429
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	172, 185, 227, 291, 300
LpnPI	CCDG	8 cut(s)	37, 229, 296, 297, 334, 361, 425, 571
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	5 cut(s)	174, 187, 229, 293, 302
MboI	GATC	5 cut(s)	172, 185, 227, 291, 300
MboII	GAAGA	4 cut(s)	50, 91, 98, 101
MfeI	CAATTG	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	154, 466, 533
MlyI	GAGTC	3 cut(s)	302, 377, 396
MnlI	CCTC	8 cut(s)	17, 20, 158, 178, 209, 223, 228, 235
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	435, 531
MspI	CCGG	2 cut(s)	216, 412
MspR9I	CCNGG	3 cut(s)	217, 349, 413
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	2 cut(s)	190, 270
MwoI	GCNNNNNNNGC	2 cut(s)	187, 491
NciI	CCSGG	2 cut(s)	217, 413
NdeII	GATC	5 cut(s)	172, 185, 227, 291, 300
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 168, 181
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	207, 518
PkrI	GCNGC	2 cut(s)	145, 248
Ple19I	CGATCG	2 cut(s)	175, 188
PleI	GAGTC	3 cut(s)	302, 376, 395
PpsI	GAGTC	3 cut(s)	302, 376, 395
Ppu21I	YACGTR	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	166
PvuI	CGATCG	2 cut(s)	175, 188
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	435, 531
SatI	GCNGC	2 cut(s)	144, 247
Sau3AI	GATC	5 cut(s)	172, 185, 227, 291, 300
SchI	GAGTC	3 cut(s)	302, 377, 396
ScrFI	CCNGG	3 cut(s)	217, 349, 413
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	3 cut(s)	66, 78, 285
SfaNI	GCATC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	154, 466, 533
SsiI	CCGC	3 cut(s)	246, 268, 494
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	215, 347, 411
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	66, 175, 184, 205, 390
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	154, 466, 533
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	207, 518
Tru1I	TTAA	2 cut(s)	435, 531
Tru9I	TTAA	2 cut(s)	435, 531
TscAI	CASTG	2 cut(s)	143, 492
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 108
TspRI	CASTG	2 cut(s)	143, 492
XapI	RAATTY	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.