Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028004.1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3077

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggcgaggagagcggacgaggaatacgactatttgttcaaagtggtattaatcggcgactcgggcgttgggaaatccaacctcctctcgcgattcactcgcaacgagttctgtttggaatccaagtccaccattggcgtcgaatttgccacacgtactctccaggttgagggaagaactgtgaaagctcagatatgggacacagcaggacaggagagatacagagcaattactagtgcctactatagaggagctcttggagcactacttgtttacgatgtaacaaaaccaacaacatttgaaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0007049 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0022402 GO:0031410 GO:0031982 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

7.82

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	40, 302
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	188, 254
AluI	AGCT	2 cut(s)	188, 254
Alw21I	GWGCWC	2 cut(s)	256, 265
Ama87I	CYCGRG	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	256
Bbv12I	GWGCWC	2 cut(s)	256, 265
BciT130I	CCWGG	1 cut(s)	164
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	3 cut(s)	22, 74, 264
Bsh1236I	CGCG	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	256, 265
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	256, 265
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 63, 260
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	91
BtuMI	TCGCGA	1 cut(s)	91
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	156
CviJI	RGCY	2 cut(s)	188, 254
CviKI_1	RGCY	2 cut(s)	188, 254
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	256
FaiI	YATR	2 cut(s)	196, 246
FaqI	GGGAC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	59, 93, 119
Hpy166II	GTNNAC	2 cut(s)	129, 274
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	2 cut(s)	129, 274
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 63, 260
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	251, 260
LpnPI	CCDG	4 cut(s)	149, 176, 192, 197
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	280
MbiI	CCGCTC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	256, 265
MluCI	AATT	2 cut(s)	143, 228
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	13, 92, 95, 163, 242
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	11, 63, 260
NruI	TCGCGA	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	93, 119
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	50
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	256, 265
SetI	ASST	5 cut(s)	84, 157, 168, 190, 256
SfcI	CTRYAG	1 cut(s)	244
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	2 cut(s)	143, 228
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	143, 228
TfiI	GAWTC	2 cut(s)	93, 119
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.