Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Reverse (-)

12587113 .. 12588700

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTGTCCAGCGAGGCATCCTTGTGGCATCGTCGTCGGACGGGATTTTAAGACCCAATTGGCGGACGATGAAGCCGGAGGCGAGGAGTATTTGTTCAAGGTGGTCCTCATCGGCGACTCCGCCGTCGGCAAGTCAAACCTGCTCTCGCGCTTCACTAGGAACGAGTTTGATCAAAACTCCAAGGCCACAATTGTGGTCGAGTTTCAGACCCAGGCCATGGAAATCGACGGCAAAGAGGTCAAGGCCCAGATCTGGGACATGGCGGGACAAGAGCGCTTCCGGGCTGTCACGTCGGCTTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

102

Amino Acids

11.3

Weight (kDa)

5.08

Isoelectric Point (pI)

16.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	31 - 101	2e-07	ADP-ribosylation factor family
Ras	PF00071	33 - 101	1.5e-25	Ras family
Roc	PF08477	33 - 101	8.3e-22	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	1 cut(s)	148
AciI	CCGC	3 cut(s)	62, 120, 263
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	61, 217, 252, 253
AgsI	TTSAA	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	210
AleI	CACNNNNGTG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
Aor51HI	AGCGCT	1 cut(s)	275
AoxI	GGCC	3 cut(s)	183, 213, 243
AspLEI	GCGC	2 cut(s)	150, 276
AspS9I	GGNCC	2 cut(s)	103, 244
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	107, 244
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	212, 281
Bme18I	GGWCC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	103, 244
BmrFI	CCNGG	2 cut(s)	212, 281
BmsI	GCATC	2 cut(s)	25, 36
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	180, 210, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 217, 252, 253
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	180, 210, 216
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	4 cut(s)	61, 217, 252, 253
BseRI	GAGGAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	185, 215, 245
BsiSI	CCGG	2 cut(s)	75, 280
BslFI	GGGAC	2 cut(s)	269, 279
BslI	CCNNNNNNNGG	4 cut(s)	61, 217, 252, 253
BsmFI	GGGAC	2 cut(s)	269, 279
BsnI	GGCC	3 cut(s)	185, 215, 245
Bsp143I	GATC	2 cut(s)	169, 249
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	62, 120, 263
BspANI	GGCC	3 cut(s)	185, 215, 245
BspFNI	CGCG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	147
BssECI	CCNNGG	3 cut(s)	180, 210, 216
BssMI	GATC	2 cut(s)	169, 249
BssT1I	CCWWGG	2 cut(s)	180, 216
Bst2UI	CCWGG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	150, 276
BstKTI	GATC	2 cut(s)	172, 252
BstMBI	GATC	2 cut(s)	169, 249
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	210, 279
BstUI	CGCG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	185, 215, 245
BtgI	CCRYGG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	147
CfoI	GCGC	2 cut(s)	150, 276
Cfr13I	GGNCC	2 cut(s)	103, 244
CviAII	CATG	2 cut(s)	217, 259
CviJI	RGCY	6 cut(s)	74, 185, 215, 245, 284, 296
CviKI_1	RGCY	6 cut(s)	74, 185, 215, 245, 284, 296
DpnI	GATC	2 cut(s)	171, 251
DpnII	GATC	2 cut(s)	169, 249
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	77, 109
Eco130I	CCWWGG	2 cut(s)	180, 216
Eco47I	GGWCC	1 cut(s)	103
Eco47III	AGCGCT	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	180, 216
ErhI	CCWWGG	2 cut(s)	180, 216
FaeI	CATG	2 cut(s)	220, 262
FaiI	YATR	2 cut(s)	218, 260
FaqI	GGGAC	2 cut(s)	269, 279
FatI	CATG	2 cut(s)	216, 258
FauI	CCCGC	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	169
FokI	GGATG	1 cut(s)	3
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	149, 275
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	185, 215, 245
HapII	CCGG	2 cut(s)	75, 280
HhaI	GCGC	2 cut(s)	150, 276
Hin1II	CATG	2 cut(s)	220, 262
Hin6I	GCGC	2 cut(s)	148, 274
HinP1I	GCGC	2 cut(s)	148, 274
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	75, 280
Hpy188I	TCNGA	2 cut(s)	38, 207
Hpy99I	CGWCG	5 cut(s)	35, 38, 128, 230, 295
HpyCH4IV	ACGT	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	220, 262
HspAI	GCGC	2 cut(s)	148, 274
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	169, 249
LpnPI	CCDG	8 cut(s)	21, 88, 152, 197, 224, 238, 260, 293
LweI	GCATC	2 cut(s)	25, 36
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	171, 251
MboI	GATC	2 cut(s)	169, 249
MfeI	CAATTG	2 cut(s)	56, 189
MflI	RGATCY	1 cut(s)	249
MluCI	AATT	2 cut(s)	56, 189
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	6, 71, 76, 116, 229
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	21, 191
MspI	CCGG	2 cut(s)	75, 280
MspR9I	CCNGG	2 cut(s)	212, 281
MunI	CAATTG	2 cut(s)	56, 189
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	148
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	169, 249
NlaIII	CATG	2 cut(s)	220, 262
NmuCI	GTSAC	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	217
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	103, 244
PsuI	RGATCY	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	21, 191
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	169, 249
Sau96I	GGNCC	2 cut(s)	103, 244
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	212, 281
SetI	ASST	4 cut(s)	102, 141, 240, 293
SfaNI	GCATC	2 cut(s)	25, 36
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	21, 191
Sse9I	AATT	2 cut(s)	56, 189
SsiI	CCGC	3 cut(s)	62, 120, 263
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	210, 279
StyI	CCWWGG	2 cut(s)	180, 216
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	198, 225
TasI	AATT	2 cut(s)	56, 189
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	103
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.