Rroxscaffold_7G00201040

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
48516322 .. 48517466
1145 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00201040.1

Sequence Viewer

Length: 204 bp
ATGGAGAGAGGATGTAGCAAAGGGAAAAGCAGAGGCTGCGAAAGTGATGAAGAAGAACCAACCGCCAAAGCTGGAACCTCAAGCTCAAAGTCTGCAAAAGTCTCCAAAAGAGTTGCAGCTGCAACTCCTTCAACAAAGTGCCGCTGGGGACCTCAAAATCTGCAAAACCACGTAAACAAGGGCTGCTACCACCAAAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.21

Weight (kDa)

9.59

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 142
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 3 cut(s) 71, 84, 119
AluI AGCT 3 cut(s) 71, 84, 119
Alw26I GTCTC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 36, 116, 119, 183
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
BbvI GCAGC 4 cut(s) 23, 106, 128, 170
BcoDI GTCTC 1 cut(s) 106
BisI GCNGC 5 cut(s) 37, 117, 120, 142, 184
BlsI GCNGC 5 cut(s) 38, 118, 121, 143, 185
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 76, 150
BpuEI CTTGAG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 172
BseGI GGATG 1 cut(s) 17
BseXI GCAGC 4 cut(s) 23, 106, 128, 170
BseYI CCCAGC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 162
BspACI CCGC 2 cut(s) 63, 142
BspLI GGNNCC 2 cut(s) 76, 150
BstAPI GCANNNNNTGC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 172
BstF5I GGATG 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstV1I GCAGC 4 cut(s) 23, 106, 128, 170
BtsCI GGATG 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 149
CviJI RGCY 5 cut(s) 36, 71, 84, 119, 183
CviKI_1 RGCY 5 cut(s) 36, 71, 84, 119, 183
Eco47I GGWCC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 149
FaqI GGGAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 37, 117, 120, 142, 184
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 5 cut(s) 37, 117, 120, 142, 184
GluI GCNGC 5 cut(s) 37, 117, 120, 142, 184
GsaI CCCAGC 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 95, 116, 122, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 171
LpnPI CCDG 2 cut(s) 57, 130
Lsp1109I GCAGC 4 cut(s) 23, 106, 128, 170
MaeII ACGT 1 cut(s) 171
MboII GAAGA 2 cut(s) 62, 65
MnlI CCTC 3 cut(s) 26, 88, 162
MspA1I CMGCKG 2 cut(s) 119, 144
MwoI GCNNNNNNNGC 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 76, 150
PkrI GCNGC 5 cut(s) 38, 118, 121, 143, 185
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 76, 150
PspPI GGNCC 1 cut(s) 149
PspPPI RGGWCCY 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 119
SatI GCNGC 5 cut(s) 37, 117, 120, 142, 184
Sau96I GGNCC 1 cut(s) 149
SetI ASST 7 cut(s) 73, 80, 86, 121, 154, 174, 203
SgeI CNNG 5 cut(s) 84, 93, 157, 182, 190
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SsiI CCGC 2 cut(s) 63, 142
TaiI ACGT 1 cut(s) 174
TauI GCSGC 1 cut(s) 144
TseI GCWGC 4 cut(s) 36, 116, 119, 183
TspDTI ATGAA 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.