Rroxscaffold_1G00012690

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
15557921 .. 15558262
342 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00012690.1

Sequence Viewer

Length: 261 bp
ATGTCGTGCTCTTCCTCCGCCTCACCTGCATCCGGTGACAACGACAAGGCCCTCGGCTTCTTCATCCCCAATCGAAAATCCCAACCGGAAAGTCTCTCCGGCTCTTCGAGATGGCCTATAGGTTCATTTCGCAACGAGTTCAACCTCGAGTCTATATCCACCATCGGCGTTGAGTTCGCCACTCGAAGCATCCATGTCAATGATAAGATCGTCAAGGCCCGATTTGGGACACCACCGCCAAGAAAGGTGATAAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.31

Weight (kDa)

9.85

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AciI CCGC 2 cut(s) 18, 236
AfiI CCNNNNNNNGG 2 cut(s) 32, 225
AgsI TTSAA 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 48, 113, 216
AspS9I GGNCC 2 cut(s) 49, 217
AsuHPI GGTGA 3 cut(s) 15, 47, 259
AvaI CYCGRG 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 2 cut(s) 105, 170
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 49, 217
BmsI GCATC 2 cut(s) 38, 198
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 32, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 225
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 3 cut(s) 29, 63, 189
BseLI CCNNNNNNNGG 2 cut(s) 32, 225
BshFI GGCC 3 cut(s) 50, 115, 218
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 3 cut(s) 33, 86, 99
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 32, 225
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 3 cut(s) 50, 115, 218
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 18, 236
BspANI GGCC 3 cut(s) 50, 115, 218
BspMI ACCTGC 1 cut(s) 34
BspQI GCTCTTC 2 cut(s) 16, 109
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 16, 109
BstF5I GGATG 3 cut(s) 29, 63, 189
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 50, 115, 218
BtsCI GGATG 3 cut(s) 29, 63, 189
BveI ACCTGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 49, 217
CviAII CATG 1 cut(s) 194
CviJI RGCY 6 cut(s) 50, 57, 102, 115, 218, 255
CviKI_1 RGCY 6 cut(s) 50, 57, 102, 115, 218, 255
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 16, 109
EarI CTCTTC 2 cut(s) 16, 109
EciI GGCGGA 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 49
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 119, 155, 195
FaqI GGGAC 1 cut(s) 241
FatI CATG 1 cut(s) 193
FokI GGATG 3 cut(s) 16, 50, 176
HaeIII GGCC 3 cut(s) 50, 115, 218
HapII CCGG 3 cut(s) 33, 86, 99
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 149
HpaII CCGG 3 cut(s) 33, 86, 99
HphI GGTGA 3 cut(s) 15, 47, 259
Hpy188III TCNNGA 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 1 cut(s) 207
LguI GCTCTTC 2 cut(s) 16, 109
LpnPI CCDG 4 cut(s) 39, 46, 99, 112
LweI GCATC 2 cut(s) 38, 198
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 3 cut(s) 3, 52, 96
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 4 cut(s) 25, 31, 62, 155
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 3 cut(s) 33, 86, 99
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 34
PciSI GCTCTTC 2 cut(s) 16, 109
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 49, 217
PspXI VCTCGAGB 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 16, 109
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 2 cut(s) 49, 217
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 11
SetI ASST 4 cut(s) 28, 124, 147, 249
SfaNI GCATC 2 cut(s) 38, 198
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SsiI CCGC 2 cut(s) 18, 236
TaqI TCGA 4 cut(s) 73, 107, 147, 184
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 52, 114
XhoI CTCGAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.