Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

75702777 .. 75709167

Gene Structure 6391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG578100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCACTGATTCTCCGGCGACGACGACAAGGCCCGCGACCTCTTCATCTCCAACCGAAAAGTCGCTCCAGCTCTTCGACATGGCCTACAGCTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCCGGTTTGCCACCCGAGTTCAACCTCGAGTCTAAGTCCACCATCGGTGTCGAGTTTGCCACCCGGAGCATCCATGCAATAAGTTACCTTTATATCCTGATCCAGCCAGAGAAGCTTTACCATTTTTGGAAAGTGTCAGAGAGGCTAGAAGATTGGCCACCCCGCTTATCATGTCAGTATGCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

107

Amino Acids

12.17

Weight (kDa)

5.72

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 298
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	130, 290
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	115, 157
AluBI	AGCT	3 cut(s)	73, 93, 250
AluI	AGCT	3 cut(s)	73, 93, 250
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	2 cut(s)	149, 161
AoxI	GGCC	4 cut(s)	32, 84, 130, 290
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	199
AvaI	CYCGRG	2 cut(s)	149, 161
BalI	TGGCCA	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	199
BmeT110I	CYCGRG	2 cut(s)	149, 161
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	137
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	4 cut(s)	34, 86, 132, 292
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	149, 161
BsiSI	CCGG	3 cut(s)	17, 138, 199
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	4 cut(s)	34, 86, 132, 292
BsoBI	CYCGRG	2 cut(s)	149, 161
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	126, 234
BspACI	CCGC	2 cut(s)	36, 298
BspANI	GGCC	4 cut(s)	34, 86, 132, 292
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	2 cut(s)	126, 234
Bst6I	CTCTTC	2 cut(s)	49, 80
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	94, 168
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	129, 237
BstMBI	GATC	2 cut(s)	126, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	34, 86, 132, 292
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	5 cut(s)	82, 134, 209, 306, 321
CviJI	RGCY	9 cut(s)	34, 73, 86, 93, 132, 241, 250, 280, 292
CviKI_1	RGCY	9 cut(s)	34, 73, 86, 93, 132, 241, 250, 280, 292
DdeI	CTNAG	2 cut(s)	94, 168
DpnI	GATC	2 cut(s)	128, 236
DpnII	GATC	2 cut(s)	126, 234
EaeI	YGGCCR	2 cut(s)	130, 290
Eam1104I	CTCTTC	2 cut(s)	49, 80
EarI	CTCTTC	2 cut(s)	49, 80
Eco88I	CYCGRG	2 cut(s)	149, 161
FaeI	CATG	5 cut(s)	85, 137, 212, 309, 324
FaiI	YATR	7 cut(s)	83, 135, 210, 228, 307, 315, 322
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	5 cut(s)	81, 133, 208, 305, 320
FauI	CCCGC	2 cut(s)	43, 305
FokI	GGATG	1 cut(s)	191
FspBI	CTAG	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	34, 86, 132, 292
HapII	CCGG	3 cut(s)	17, 138, 199
Hin1II	CATG	5 cut(s)	85, 137, 212, 309, 324
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	11, 164
HpaII	CCGG	3 cut(s)	17, 138, 199
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	97, 274
Hpy188III	TCNNGA	2 cut(s)	124, 232
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	94, 168
Hsp92II	CATG	5 cut(s)	85, 137, 212, 309, 324
Kzo9I	GATC	2 cut(s)	126, 234
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	72, 201
LpnPI	CCDG	7 cut(s)	30, 83, 151, 212, 245, 251, 255
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	128, 236
MboI	GATC	2 cut(s)	126, 234
MboII	GAAGA	3 cut(s)	36, 67, 296
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	52, 170, 270
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	292
MspI	CCGG	3 cut(s)	17, 138, 199
MspR9I	CCNGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	126, 234
NlaIII	CATG	5 cut(s)	85, 137, 212, 309, 324
PaeR7I	CTCGAG	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	126, 234
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	44, 75, 95, 120, 162, 225, 252
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	2 cut(s)	36, 298
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	197
TaqI	TCGA	3 cut(s)	78, 162, 186
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	161
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.