Rmu_sc0006476.1_g000006

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006476.1
OG0001046
Physical Location & Seq
Forward (+)
40863 .. 41204
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006476.1_g000006.1.cds

Sequence Viewer

Length: 342 bp
atgacgaggccctccaccaccaatatcgcctcttcctccacctcacctgcatctggtgacaacgataaggccctcggcttcttcatccccaatcgaaaatcccaaccggaaagtctctccggctcttcgagatggcctataggtcagacatcgacttcaagttcgtcttcctcgatgattccggcgtcggcaaacccaacctcttgtccaggttcatttcacaacgagttcaacctcgagtctatatccactatcggcgtcaagttcgccacttggagcatccatgtcgatgataagatcatcaaggcccagatttgggacaccaccgaccaagaaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

113

Amino Acids

12.11

Weight (kDa)

6.04

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 185, 258
AfiI CCNNNNNNNGG 3 cut(s) 53, 315, 316
AgsI TTSAA 2 cut(s) 159, 232
AjnI CCWGG 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 4 cut(s) 8, 69, 134, 306
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspS9I GGNCC 3 cut(s) 9, 70, 307
AsuHPI GGTGA 2 cut(s) 36, 68
AvaI CYCGRG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 159
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 9, 70, 307
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 59, 288
BpiI GAAGAC 1 cut(s) 159
BsaHI GRCGYC 2 cut(s) 185, 258
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 315, 316
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 84, 279
BseLI CCNNNNNNNGG 3 cut(s) 53, 315, 316
BshFI GGCC 4 cut(s) 10, 71, 136, 308
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 3 cut(s) 107, 120, 182
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 53, 315, 316
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 4 cut(s) 10, 71, 136, 308
BsoBI CYCGRG 1 cut(s) 236
Bsp143I GATC 1 cut(s) 297
BspANI GGCC 4 cut(s) 10, 71, 136, 308
BspMI ACCTGC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 297
BssNI GRCGYC 2 cut(s) 185, 258
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 37, 130
BstACI GRCGYC 2 cut(s) 185, 258
BstF5I GGATG 2 cut(s) 84, 279
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 4 cut(s) 10, 71, 136, 308
BtsCI GGATG 2 cut(s) 84, 279
BveI ACCTGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 9, 70, 307
CseI GACGC 2 cut(s) 174, 247
CviAII CATG 1 cut(s) 284
CviJI RGCY 6 cut(s) 10, 71, 78, 123, 136, 308
CviKI_1 RGCY 6 cut(s) 10, 71, 78, 123, 136, 308
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 37, 130
EarI CTCTTC 2 cut(s) 37, 130
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 9, 70
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 287
FaiI YATR 3 cut(s) 140, 245, 285
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 283
FokI GGATG 2 cut(s) 71, 266
HaeIII GGCC 4 cut(s) 10, 71, 136, 308
HapII CCGG 3 cut(s) 107, 120, 182
HgaI GACGC 2 cut(s) 174, 247
Hin1I GRCGYC 2 cut(s) 185, 258
Hin1II CATG 1 cut(s) 287
HinfI GANTC 2 cut(s) 178, 239
HpaII CCGG 3 cut(s) 107, 120, 182
HphI GGTGA 2 cut(s) 36, 68
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 185, 258
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 297
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 39, 60, 120, 133, 195, 195, 222, 323
LweI GCATC 2 cut(s) 59, 288
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 4 cut(s) 24, 73, 117, 159
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 8 cut(s) 22, 40, 46, 52, 83, 181, 211, 245
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 3 cut(s) 107, 120, 182
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NdeII GATC 1 cut(s) 297
NlaIII CATG 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 236
PaqCI CACCTGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 3 cut(s) 9, 70, 307
PspXI VCTCGAGB 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 3 cut(s) 9, 70, 307
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 210
SetI ASST 7 cut(s) 44, 49, 145, 203, 214, 237, 341
SfaNI GCATC 2 cut(s) 59, 288
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 208
TaqI TCGA 6 cut(s) 94, 128, 152, 173, 237, 288
TfiI GAWTC 1 cut(s) 178
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 73, 204
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.