Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001046

Physical Location & Seq

Genomic Coordinates Forward (+)

9146608 .. 9151461

Gene Structure 4854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGCACTGATTCTCCGGCGACGACGACAAGGCCCGCGACCTCTTCATCTCCAACCGAAAAGTCGTTCCAGCTCTTCGAAATGGCCTACAGGTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCTGGTATCGGCAAATCCGATTTGTTGTCCAGCATGGGACTTGCCTCTGCCAACAGACTAGCTACAGAGGCCATGCTGCAGCTGTTGCTAGTGATGGCAACAGATGGAGGGTCAAATCTCATGGATATTGTTGGCTGGTCCATGGAGATGCTGAAGGGGATACCAAGCTGGAATGCTCCATGTCCCATTCAATCTGGAGCCCCACTAACTATATCGGTGGCTCCCAAAGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.03

Weight (kDa)

5.51

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001046)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17470 pycom10g23030 pycom11g08540
rosa_chinensis	RchiOBHm_Chr1g0384011 RchiOBHm_Chr2g0132131 RchiOBHm_Chr4g0395691 RchiOBHm_Chr5g0069101
rosa_laevigata	RLG00000000980 RLG00000001235 RLG00000001985 RLG00000007653 RLG00000008963 RLG00000016817 RLG00000017446 RLG00000025593 RLG00000027792 RLG00000034798
rosa_multiflora	Rmu_sc0000147.1_g000054 Rmu_sc0000515.1_g000004 Rmu_sc0001124.1_g000008 Rmu_sc0001772.1_g000070 Rmu_sc0002117.1_g000012 Rmu_sc0002354.1_g000005 Rmu_sc0003417.1_g000017 Rmu_sc0004126.1_g000007 Rmu_sc0005891.1_g000017 Rmu_sc0006185.1_g000009 Rmu_sc0006269.1_g000026 Rmu_sc0006476.1_g000006 Rmu_sc0008148.1_g000014 Rmu_sc0028003.1_g000001 Rmu_sc0028004.1_g000001 Rmu_sc0041935.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436020 Rroxscaffold_1G00012690 Rroxscaffold_1G00013410 Rroxscaffold_1G00024270 Rroxscaffold_1G00038040 Rroxscaffold_2G00114590 Rroxscaffold_2G00123520 Rroxscaffold_3G00254050 Rroxscaffold_4G00292780 Rroxscaffold_7G00201040
rosa_rugosa	Rorug01G0444100
rosa_samantha	Rh1AG292600 Rh2CG578100 Rh3AG108300 Rh4CG067200 Rh5BG073700 Rh5BG436600 Rh5CG021900 Rh5DG332600 Rh6AG115600 Rh6AG208100 Rh6CG444300 Rh7AG240900 Rh7BG271500 Rh7BG309900 Rh7DG246900 Rh7DG389500 Rh7DG421800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	115, 326
AluBI	AGCT	5 cut(s)	73, 197, 217, 303, 365
AluI	AGCT	5 cut(s)	73, 197, 217, 303, 365
Alw21I	GWGCWC	1 cut(s)	8
AoxI	GGCC	4 cut(s)	32, 84, 130, 204
ApeKI	GCWGC	2 cut(s)	211, 214
AspS9I	GGNCC	2 cut(s)	33, 273
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	198, 226
BccI	CCATC	2 cut(s)	223, 233
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	194, 224
BfmI	CTRYAG	3 cut(s)	88, 198, 212
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	212, 215
BlsI	GCNGC	2 cut(s)	213, 216
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	33, 273
BmiI	GGNNCC	2 cut(s)	334, 357
BmsI	GCATC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	198, 226
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	4 cut(s)	34, 86, 132, 206
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	2 cut(s)	186, 303
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	186, 303
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	4 cut(s)	34, 86, 132, 206
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	8, 337
Bsp143I	GATC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	4 cut(s)	34, 86, 132, 206
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	334, 357
BspMAI	CTGCAG	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	49, 80
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 220, 362
BstSFI	CTRYAG	3 cut(s)	88, 198, 212
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	198, 226
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	34, 86, 132, 206
BtgI	CCRYGG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	33, 273
CviAII	CATG	6 cut(s)	134, 169, 208, 256, 277, 315
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	49, 80
EarI	CTCTTC	2 cut(s)	49, 80
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	6 cut(s)	137, 172, 211, 259, 280, 318
FaiI	YATR	9 cut(s)	135, 170, 209, 257, 278, 316, 347, 368, 370
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	186, 303
FatI	CATG	6 cut(s)	133, 168, 207, 255, 276, 314
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	212, 215
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	212, 215
FspBI	CTAG	2 cut(s)	194, 224
GluI	GCNGC	2 cut(s)	212, 215
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	34, 86, 132, 206
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	6 cut(s)	137, 172, 211, 259, 280, 318
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	97, 154
Hpy188III	TCNNGA	2 cut(s)	124, 330
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 220, 362
Hsp92II	CATG	6 cut(s)	137, 172, 211, 259, 280, 318
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	316, 332, 361
LpnPI	CCDG	8 cut(s)	30, 76, 83, 123, 178, 256, 289, 315
Lsp1109I	GCAGC	2 cut(s)	198, 226
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	2 cut(s)	194, 224
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	36, 67
MhlI	GDGCHC	2 cut(s)	8, 337
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	52, 190, 196, 236
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	313
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	203, 220, 362
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	6 cut(s)	137, 172, 211, 259, 280, 318
NlaIV	GGNNCC	2 cut(s)	334, 357
NspV	TTCGAA	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	213, 216
PspN4I	GGNNCC	2 cut(s)	334, 357
PspPI	GGNCC	2 cut(s)	33, 273
PstI	CTGCAG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	80
SatI	GCNGC	2 cut(s)	212, 215
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	33, 273
SduI	GDGCHC	2 cut(s)	8, 337
SetI	ASST	8 cut(s)	44, 75, 95, 120, 199, 219, 305, 367
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	3 cut(s)	88, 198, 212
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	281
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	194, 224
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	211, 214
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	273
XspI	CTAG	2 cut(s)	194, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.