Rroxscaffold_2G00123520

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001046
Physical Location & Seq
Forward (+)
57355505 .. 57358442
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123520.1

Sequence Viewer

Length: 798 bp
ATGTCGTTGCGACCTCACGAGCTCGCCGGCGACGACTTAGAGGCAAGGCACAACCGAAACGATGTCGTTGCATACCTCACAATCGCCGGTGATGCCTTGAACGGCGTGATCTACACAACAAAGTCGTCACGGTCTCCGGCTCTTCGACGAGGCCTTCCACCACCAATATCACCTCTTCCTCCGCCTCACCCGCATCCGGTGACAACGACAAGCTTCTTCATCCCCAATCGAAAATCCCAACCGGAAAGTCTCTTCGGCTCTTCCGTATGGCCTATAGGTCGAACGACGACTACGACTACCTCTTCGAGTTCGTCTTCATCGGTGATTCTAGCTTCGGCAAATCCAACCTCTTGTCCAGGTTCATTTCGCAACGAGTTCAACCCTAGGTCTATATCCACCATTGGCGTTGAGTTTGCCACTTGGAGCATCCACGTCGATGATAAGATCGTCAAGGCCCGCATTTTGGACACCACCGCCAAGAAAGCAAGATTATGTTCAAGAGTGGCGTCCTCCACGACATCGCTGGCTTCAGCTTCTCGTCGAAGAGGGAAACCATTTGGGCGAAGTCCCAAAATCTGGCAACCGTTTGGGTGGAAGAAGAGTTTGCATGCAGAGGGTGACGTCTTTGTTGGTGTTAGGATGGAGGGATACAAGGACGTCATGGTGGAAAACGACGGGACTTTTGAGGATTTCGAGAAGGGAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTTCTGGGGTTAGTTTTGATCTCCAGATCGACTTGGACGATACAGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

265

Amino Acids

29.21

Weight (kDa)

9.11

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 624, 660
AccB7I CCANNNNNTGG 1 cut(s) 576
AciI CCGC 4 cut(s) 182, 191, 457, 474
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 3 cut(s) 506, 621, 657
AfiI CCNNNNNNNGG 3 cut(s) 196, 463, 576
AgsI TTSAA 3 cut(s) 100, 379, 498
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 22, 213, 332, 533
AluI AGCT 4 cut(s) 22, 213, 332, 533
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 138, 254
AoxI GGCC 3 cut(s) 151, 269, 453
ArsI GACNNNNNNTTYG 4 cut(s) 286, 318, 665, 697
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 6 cut(s) 101, 162, 179, 211, 334, 629
AvrII CCTAGG 1 cut(s) 383
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 634
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 4 cut(s) 50, 84, 415, 449
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 138, 254
BfaI CTAG 2 cut(s) 329, 384
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 641
BlnI CCTAGG 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 357
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 3 cut(s) 82, 202, 435
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 752
BsaHI GRCGYC 3 cut(s) 506, 621, 657
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 2 cut(s) 196, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 463, 576
Bse118I RCCGGY 2 cut(s) 26, 86
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 4 cut(s) 193, 219, 426, 645
BseLI CCNNNNNNNGG 3 cut(s) 196, 463, 576
BshFI GGCC 3 cut(s) 153, 271, 455
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 5 cut(s) 27, 87, 137, 197, 242
BslFI GGGAC 2 cut(s) 552, 691
BslI CCNNNNNNNGG 3 cut(s) 196, 463, 576
BsmAI GTCTC 2 cut(s) 138, 254
BsmFI GGGAC 2 cut(s) 552, 691
BsnI GGCC 3 cut(s) 153, 271, 455
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 108, 444, 763, 771
BspACI CCGC 4 cut(s) 182, 191, 457, 474
BspANI GGCC 3 cut(s) 153, 271, 455
BspQI GCTCTTC 2 cut(s) 147, 265
BspTNI GGTCTC 1 cut(s) 138
BsrFI RCCGGY 2 cut(s) 26, 86
BssAI RCCGGY 2 cut(s) 26, 86
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 4 cut(s) 108, 444, 763, 771
BssNI GRCGYC 3 cut(s) 506, 621, 657
BssSI CACGAG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 132, 585, 790
Bst6I CTCTTC 7 cut(s) 147, 180, 257, 265, 307, 538, 593
BstACI GRCGYC 3 cut(s) 506, 621, 657
BstC8I GCNNGC 5 cut(s) 24, 28, 457, 525, 609
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 4 cut(s) 193, 219, 426, 645
BstKTI GATC 4 cut(s) 111, 447, 766, 774
BstMAI GTCTC 2 cut(s) 138, 254
BstMBI GATC 4 cut(s) 108, 444, 763, 771
BstMWI GCNNNNNNNGC 3 cut(s) 92, 190, 482
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 306
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 3 cut(s) 153, 271, 455
BtgZI GCGATG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 4 cut(s) 193, 219, 426, 645
BtsIMutI CAGTG 1 cut(s) 795
Cac8I GCNNGC 5 cut(s) 24, 28, 457, 525, 609
Cfr10I RCCGGY 2 cut(s) 26, 86
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 495
CviAII CATG 2 cut(s) 608, 661
DdeI CTNAG 1 cut(s) 37
DpnI GATC 4 cut(s) 110, 446, 765, 773
DpnII GATC 4 cut(s) 108, 444, 763, 771
Eam1104I CTCTTC 7 cut(s) 147, 180, 257, 265, 307, 538, 593
EarI CTCTTC 7 cut(s) 147, 180, 257, 265, 307, 538, 593
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 2 cut(s) 611, 664
FaiI YATR 8 cut(s) 73, 268, 275, 392, 493, 609, 662, 796
FaqI GGGAC 2 cut(s) 552, 691
FatI CATG 2 cut(s) 607, 660
FauI CCCGC 2 cut(s) 198, 464
FokI GGATG 4 cut(s) 180, 206, 413, 652
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 2 cut(s) 329, 384
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 3 cut(s) 153, 271, 455
HapII CCGG 5 cut(s) 27, 87, 137, 197, 242
HgaI GACGC 1 cut(s) 495
Hin1I GRCGYC 3 cut(s) 506, 621, 657
Hin1II CATG 2 cut(s) 611, 664
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 1 cut(s) 325
HpaII CCGG 5 cut(s) 27, 87, 137, 197, 242
HphI GGTGA 6 cut(s) 101, 162, 179, 211, 334, 629
Hpy188III TCNNGA 4 cut(s) 17, 498, 694, 769
Hpy99I CGWCG 6 cut(s) 35, 150, 289, 437, 543, 677
HpyAV CCTTC 3 cut(s) 164, 691, 696
HpyCH4III ACNGT 3 cut(s) 132, 585, 790
HpyCH4IV ACGT 3 cut(s) 432, 621, 657
HpyCH4V TGCA 3 cut(s) 71, 607, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 190, 482
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 3 cut(s) 432, 621, 657
Hsp92I GRCGYC 3 cut(s) 506, 621, 657
Hsp92II CATG 2 cut(s) 611, 664
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 4 cut(s) 108, 444, 763, 771
LguI GCTCTTC 2 cut(s) 147, 265
LmnI GCTCC 1 cut(s) 423
LweI GCATC 3 cut(s) 82, 202, 435
MaeI CTAG 2 cut(s) 329, 384
MaeII ACGT 3 cut(s) 432, 621, 657
MaeIII GTNAC 3 cut(s) 126, 199, 617
MalI GATC 4 cut(s) 110, 446, 765, 773
MboI GATC 4 cut(s) 108, 444, 763, 771
MhlI GDGCHC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 368
MreI CGCCGGCG 1 cut(s) 26
MroNI GCCGGC 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 5 cut(s) 27, 87, 137, 197, 242
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 92, 190, 482
NaeI GCCGGC 1 cut(s) 28
NdeII GATC 4 cut(s) 108, 444, 763, 771
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 611, 664
NmuCI GTSAC 3 cut(s) 126, 199, 617
NspI RCATGY 1 cut(s) 611
PaeI GCATGC 1 cut(s) 611
PceI AGGCCT 1 cut(s) 153
PciSI GCTCTTC 2 cut(s) 147, 265
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 261, 290, 780
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspPI GGNCC 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 2 cut(s) 147, 265
Sau3AI GATC 4 cut(s) 108, 444, 763, 771
Sau96I GGNCC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 3 cut(s) 82, 202, 435
SfcI CTRYAG 1 cut(s) 273
SgrAI CRCCGGYG 2 cut(s) 26, 86
SmiMI CAYNNNNRTG 1 cut(s) 435
SphI GCATGC 1 cut(s) 611
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 4 cut(s) 182, 191, 457, 474
SspMI CTAG 2 cut(s) 329, 384
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 3 cut(s) 132, 585, 790
TaiI ACGT 3 cut(s) 435, 624, 660
TaqI TCGA 8 cut(s) 145, 229, 280, 305, 435, 541, 693, 774
TfiI GAWTC 1 cut(s) 325
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 3 cut(s) 126, 199, 617
Tsp45I GTSAC 3 cut(s) 126, 199, 617
TspDTI ATGAA 3 cut(s) 208, 306, 351
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 795
Van91I CCANNNNNTGG 1 cut(s) 576
XceI RCATGY 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 2 cut(s) 329, 384
ZraI GACGTC 2 cut(s) 622, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.